Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01878 ATGGCAGAAGGGGGAAAAAGAAATGTAAGTGGCTTTGATGTTGGTACTGGACATGGCAGCTTCTTTATCCGAGTCAACAATCAGAATTATCACAATATGTTTCCTGATGAAATACAAATTAGAACCAGTAGTGGTTTCTGGAGTATAAATCCTGAAAATTCAAGAGCAATGCAAAACTTGTTTGGTGATGAAATTCTTGCCATGCGATTTGATTCCTATGAAGCTGGGGAGTCATTTTACCAGAAATATGCTTCAGCTGTTGGCTTTACTATTCGAGAGGATGACATGGGTAAATACAAGCTGGGTGGTGAGGTTGTCATGAAAAGATGGATTTGTAATGGAGAAGGCTTTCAGCAAAATATAGGGGATCCTAGTTCATCATCTAGAGTTAAGTGTCCTGCTGCATTTTGCATACATGCTGACCGTGTCAGTCATAAGTGGCTTGTAATAGAGTTTGTGGCAAAGCATATACATGAATTGGCACCAACAAACAAACATCTTCAAGTGGCAGTAGCAGATAATTTGGGAAGAAAAGATGCTGAGTATTATATAGTTGGCACAGCAGTAAAACTGCCCACTTCTGGTAAGGGAATTACAATCACTGATGTGGAAGGTGCCCTTGATTATCTATCTTATAAGAAGGATGGAGACTCTGGGTTATTCTATGAAACAAAATTTGTTGAAGGTCGTTTATCATCTCTGTTTTGGGCAGACTCTGTATCTCAGTTAGATGATGCATGTTTTGGGGAAGCTATGGCAGTCTATAGGACAAATTCATATATGATGCCCTTAGTCATATTGGCTGGTCTCAATCATCATCATCAAACATGTGTATTTGGATGTGCTTTACTTCAAGAGGAAACTGTTGAGGCATACACATGGTTGTTTCAAACATTTCTTCATGTAATGCAGGGTTGCATGCCCATATCTGTGGTGACTGATGGTCATAAACCTTTACACAAAGCTATTAAGCATGTGCTACCACGATCAAGACAGAGGCCATGCACCTGGCATCTTGAGAATGAAGCTCATACCATTGTTAATAAACGGTCCTTTGTATCTGACTTTAAAGTATGCATGATGGAGTTTCTTTCACAAGAGGATTTTGAGCTTAAATGGAAGGCAATGGTTGAAAAGTATAAACTGTCTGAGAACCCATGGATACATAGGATGTATAAGAAACGTCACATGTGGGCAGAGACTTACTTGAGAGGACATTTCTGGGTGTGTGATGAGGCCATTTTTCCAATCCGGTTCTCTGAGGTGAAAGCTGAATATGAATCCATCCACATCCAGTTTCCTCTTTCAACATTTCTTGTGAAAATTGAGAAACATGCTGCTGATGATGGTTCAAATCATCGCACATACAGATTGGGCAACTATGAGAATCAGAACTTAGTGTATGAAGTTATGTTCAAGCCTAGTGGTCCAAGTATTAAATGCTCATGCTTGAAGTTTGAGACATTGGGACTTCCTTGCAGTCACATTATTCATCGTTCCTTGCCTCCAGTATCTAGTGATCTTATGGAAAAACTGATGCACTATGGTGCTTTGACGTCTGATTTTTCCATATCAAGTTACTTGGCGTCAAAATCTTCAGAGAAGACATATAACTCTGTGTACAGTTTAATGTGGAAGAAGGAATGTGAAAGAAGGAAAATCAGTGGAGACAAGCGAAAGAAAGCCAACTAA 1692 0.3948 MAEGGKRNVSGFDVGTGHGSFFIRVNNQNYHNMFPDEIQIRTSSGFWSINPENSRAMQNLFGDEILAMRFDSYEAGESFYQKYASAVGFTIREDDMGKYKLGGEVVMKRWICNGEGFQQNIGDPSSSSRVKCPAAFCIHADRVSHKWLVIEFVAKHIHELAPTNKHLQVAVADNLGRKDAEYYIVGTAVKLPTSGKGITITDVEGALDYLSYKKDGDSGLFYETKFVEGRLSSLFWADSVSQLDDACFGEAMAVYRTNSYMMPLVILAGLNHHHQTCVFGCALLQEETVEAYTWLFQTFLHVMQGCMPISVVTDGHKPLHKAIKHVLPRSRQRPCTWHLENEAHTIVNKRSFVSDFKVCMMEFLSQEDFELKWKAMVEKYKLSENPWIHRMYKKRHMWAETYLRGHFWVCDEAIFPIRFSEVKAEYESIHIQFPLSTFLVKIEKHAADDGSNHRTYRLGNYENQNLVYEVMFKPSGPSIKCSCLKFETLGLPCSHIIHRSLPPVSSDLMEKLMHYGALTSDFSISSYLASKSSEKTYNSVYSLMWKKECERRKISGDKRKKAN. 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01878 563 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 65 511 IPR031052 GO:0006355
Seca4g01878 563 Pfam MULE transposase domain 254 341 IPR018289 -
Seca4g01878 563 ProSiteProfiles Zinc finger SWIM-type profile. 468 504 IPR007527 GO:0008270
Seca4g01878 563 Pfam FAR1 DNA-binding domain 78 161 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01878 Seca-Chr4 31521290 31523248 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g01878 MULE 4.9e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01878 - - aip:107611742 449.514