Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01865 ATGAGATTAATTGGGTTCTGTACAACCTCAACTGAAAGAATCCTAGTATATCCTTTCATGAAAAATGGAAGTGTAGCATATAGATTGAGAGATTTAAAACCTGATGAGAAAGGTTTGGACTGGCCAATGAGGAAACGTGTGGCTTTTGGTACAGCTCATGGCTTGGAGTATCTACATGAGCAATGCAATCCAAAGATAATACACCGTGATTTGAAAGCAGCAAACATTCTACTAGATGATGAATTTGAAGCTGTTCTAGGAGATTTTGGACTAGCTAAGCTGGTAGATACAAGGATGACTCATGTTACCACTCAAGTAAGAGGTACAATGGGTCATATAGCCCCAGAATATTTATCCACAGGAAAATCATCAGAAAAAACAGATGTCTTTGGCTATGGTATAACACTTCTTGAACTAGTCACTGGTCAACGTGCCATAGACTTCTTTCGGCTTCAAGAGGAGGAGGATGCACTCCTTCTTGATCATATAAAAAAGCTACTGAGAGAAAACAGGCTGGAGGACATAGTGGATGGGAATTTGGAGATTTATGATAGGAAAGAAGTTGAGAACATTGTTCATGTTGCATTGCTTTGCACTAAAGGGTTGCCAGAGGAGCGTCCAACGATGTCAGAGGTGGTAAAAATGCTGGAAGGGGTTGGTTTGGCAGAGAGATGGGCTGAGTGGGAGCATGAAGAAGAGGTGAATAATCAACTCATGTCTCACCAGTTTGTTTGGACTGATGAATCTACTCAAAATCAAGAGGCTATACAGCTCTCCAGAGCAAGATAG 789 0.4106 MRLIGFCTTSTERILVYPFMKNGSVAYRLRDLKPDEKGLDWPMRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTRMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFFRLQEEEDALLLDHIKKLLRENRLEDIVDGNLEIYDRKEVENIVHVALLCTKGLPEERPTMSEVVKMLEGVGLAERWAEWEHEEEVNNQLMSHQFVWTDESTQNQEAIQLSRAR. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01865 262 FunFam Somatic embryogenesis receptor-like kinase 1 20 236 - -
Seca4g01865 262 Pfam Protein kinase domain 2 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01865 262 SMART serkin_6 1 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01865 262 ProSiteProfiles Protein kinase domain profile. 1 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01865 262 ProSitePatterns Serine/Threonine protein kinases active-site signature. 66 78 IPR008271 GO:0004672|GO:0006468
Seca4g01865 262 PIRSF ILK 1 235 - -
Seca4g01865 262 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 227 - -
Seca4g01865 262 Gene3D Transferase(Phosphotransferase) domain 1 20 236 - -
Seca4g01865 262 SUPERFAMILY Protein kinase-like (PK-like) 2 217 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01865 Seca-Chr4 31200367 31202247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01865 1 262 Receptor kinase-like Gene Family AT5G10290 68.045 1.19e-125 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca4g01865 Pkinase 1.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01865 - - gmx:100799227 439.113