Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01862 ATGGCTGCTTCTCCACCTTTTCCAATAGCATACGAGGCAGGGACGAGTCAAGCAGTGCCAAATTGGTTAAACAAAGGTGACAACTCATGGCAAATGATAGCAGCAACCCTTGTTGGGATTCAGAGCATGCCAGGCCTTGTCATCCTCTATGGCAGCATCGTCAAGAAGAAATGGGCTGTCAACTCTGCTTTCATGGCTCTCTATGCATTCGCAGCTGTTGTTATCTGTTGGGTCACTTGGGCTTACAAGATGTCCTTTGGGAAGAAGCTTTTCCCCTTTTGGGGTAGAGCTGGTCCTGCTTTGGGACAGAGGTTTCTCATCAAACAAGCTGCTCTCCCTGCTACCACGCATTTCTATGAGAATGGTACTGTGGTGGAGACACCAGAGATTGATCCCTTTTATCCCATGGCTACCATGGTGTGGTTCCAGTGTGTTTTTGCTGCTATCACTGTGATTATCTTGGCGGGATCAGTGTTGGCAAGGATGAACTTTAAGGCGTGGATGATGTTTGTGCCTCTTTGGGTCACTTTTTCTTACACTGTTGGTGCTTTCAGCTTGTGGGGTGGTGGCTTCTTGTTTCAATGGGGTGTTATGGACTATTCTGGTGGCTATGTCATTCATCTCTCTTCTGGGATTGCTGGCTTCACTGCTGCTTATTGGGTGGGGCCAAGATCAACGAAGGACAGGGAGAGGTTCCCACCAAACAATGTGTTACTAACATTGGCAGGAGCAGGACTACTATGGCTAGGATGGGCAGGTTTCAACGGTGGTGATCCTTACGCTGCCAACATAGATTCATCCATGGCAGTGCTTAACACCAACATCACCGCCGCCACCAGCCTCCTTGTCTGGACATGGCTCGACGTTATTTTCTTCAAGAAACCCTCCGTTGTTGGAGCTGTTCAGGGCATGATCACTGGTCTCGTTTGCATCACTCCTGGCGCTGGTTTGGTTCAAGGATGGGCTGCCATAGTGATGGGAGTTCTATCAGGCAGTGTGCCATGGTTCACTATGATGATATTGGGAAAGAAGTTAAAAGTGTTCCAAAGTGTAGATGACACTCTAGCAGTGTTTCACACTCATGCTGTGGCAGGATTCCTAGGTGGTATACTCACAGGCCTCTTTGCTGAACCTAGTCTAAGTACACTTTTCTTGCCAGTCACCAACTCCAAAGGTGGAGTCTATGGAGGCTCTGGCGGGGACCAAATCCTAAAACAAATAGTGGGAGGATTATTTATCATTGGATGGAATCTGGTGGTGACTTCAATTATTTGTGTGGTGGTAAGTTTGATTGTTCCTCTAAGAATGTCTGATGAGGAGTTGCTCATTGGGGATGATGCAGTTCATGGGGAAGAGGCTTATGCATTGTGGGGTGATGGAGAGAAACTTAGCATCTATGCTGAGGAGGCCACTCACTTTGGATTTGGAATGGTATCAAGTGGTGCCACCCAAGTGGTCTAG 1461 0.4784 MAASPPFPIAYEAGTSQAVPNWLNKGDNSWQMIAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWVTWAYKMSFGKKLFPFWGRAGPALGQRFLIKQAALPATTHFYENGTVVETPEIDPFYPMATMVWFQCVFAAITVIILAGSVLARMNFKAWMMFVPLWVTFSYTVGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYAANIDSSMAVLNTNITAATSLLVWTWLDVIFFKKPSVVGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWFTMMILGKKLKVFQSVDDTLAVFHTHAVAGFLGGILTGLFAEPSLSTLFLPVTNSKGGVYGGSGGDQILKQIVGGLFIIGWNLVVTSIICVVVSLIVPLRMSDEELLIGDDAVHGEEAYALWGDGEKLSIYAEEATHFGFGMVSSGATQVV. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01862 486 ProSitePatterns Ammonium transporters signature. 199 224 IPR018047 GO:0008519|GO:0016020|GO:0072488
Seca4g01862 486 NCBIfam ammonium transporter 27 454 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca4g01862 486 PRINTS Rhesus blood group protein signature 238 256 IPR002229 GO:0005886
Seca4g01862 486 PRINTS Rhesus blood group protein signature 143 159 IPR002229 GO:0005886
Seca4g01862 486 PRINTS Rhesus blood group protein signature 269 291 IPR002229 GO:0005886
Seca4g01862 486 FunFam Ammonium transporter 10 457 - -
Seca4g01862 486 Gene3D Ammonium transporter AmtB like domains 9 457 IPR029020 -
Seca4g01862 486 Pfam Ammonium Transporter Family 30 454 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca4g01862 486 SUPERFAMILY Ammonium transporter 22 436 - -
Seca4g01862 486 PANTHER AMMONIUM TRANSPORTER MEP2 14 463 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01862 Seca-Chr4 31173062 31178235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01862 136 464 Inorganic Solute Cotransporters AT2G38290 71.125 9.19e-167 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01862 K03320 - gmx:100785993 847.81