Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01856 ATGGCCGCAGAAATTTGTGGCGCGTCTCTATTCTTATCCGTTAAAACTCAACTGCAACAACAACAACACTTCCTCCATGCTCAACGAACCAGAACAGCAACAACCACTACCAGATTCCACTCATCCAAACCTTCCTTTTCTTCTCGCTCTTTCAATGCCTCCACCACCTTTCGCCGCAGCGTTTTCTGCCAGTTTGCTAGCACTGACACGCTCTCCGACTTCGAATCCGCCGCCAAAGCCGGCCAAGATCGTCTCTCTAAGGTGCCGGTGTCTAATATAAGGAACTTTTGCATCATTGCTCATATTGACCATGGCAAATCCACCCTGGCTGATAAGTTGCTTCAGGTTACTGGAACTGTGCACCAGCGAGAGATGAAGGACCAGTTTCTCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATCAAGCTTCAGGCAGCTCGAATGCGATATGTGTTTGAAAATAAACCATATTGCTTAAATTTAATAGATACTCCAGGGCATGTCGACTTCTCGTATGAGGTTTCTCGATCACTTGCAGCATGTGAGGGTGCTCTCCTTGTAGTAGATGCTTCTCAGGGTGTTGAAGCACAGACACTAGCTAATGTTTATTTGGCTCTGGAGAACAACCTAGAAATTATCCCTGTTTTGAACAAAATAGATCTTCCAGGTGCAGAACCAGATCGAGTTATCAAGGAGATTGAAGAGATTGTAGGTCTAGATTGTAGCAACGCGATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATTGATATTCTCAATGCAATCGTTGCAAGAATTCCCCCACCAGCTGATACATCTGAAAAGCCGTTGAGGGCTTTAATATTTGATAGTTACTATGATCCATATAGAGGCGTTATTGTATACTTTCGAGTTATAGATGGGACTATAAAGAAAGGTGACAGAGTATATTTTATGGCTAGTGGTAAGGATTATTTTGCCGATGAAATTGGAGTTTTGTCTCCAAATCAACTCCAAGTCGAACAATTGTATGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCCAGAGTAGGTGACACTATTACTCACTATACCAGAAAGGCGGATAATTCACTCCCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGCCTGTTTCCTGTCGACGCTGACCAATTTCCTGACCTACGTGATGCACTTGAGAAGCTACAACTAAATGATGCTGCACTAAAGTTTGAACCTGAGACCTCAAGTGCTATGGGATTTGGCTTTAGATGTGGGTTTCTGGGTCTTCTCCACATGGAAATTGTTCAGGTTTGA 1326 0.4374 MAAEICGASLFLSVKTQLQQQQHFLHAQRTRTATTTTRFHSSKPSFSSRSFNASTTFRRSVFCQFASTDTLSDFESAAKAGQDRLSKVPVSNIRNFCIIAHIDHGKSTLADKLLQVTGTVHQREMKDQFLDNMDLERERGITIKLQAARMRYVFENKPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIDILNAIVARIPPPADTSEKPLRALIFDSYYDPYRGVIVYFRVIDGTIKKGDRVYFMASGKDYFADEIGVLSPNQLQVEQLYAGEVGYLSASIRTVADARVGDTITHYTRKADNSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQV. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01856 441 NCBIfam translation elongation factor 4 92 440 IPR006297 GO:0005525
Seca4g01856 441 Gene3D - 90 273 IPR027417 -
Seca4g01856 441 SUPERFAMILY Translation proteins 270 375 IPR009000 -
Seca4g01856 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 297 IPR027417 -
Seca4g01856 441 NCBIfam small GTP-binding protein domain 94 263 IPR005225 GO:0005525
Seca4g01856 441 Gene3D Translation factors 274 373 - -
Seca4g01856 441 FunFam Elongation factor 4 90 273 - -
Seca4g01856 441 CDD LepA 94 271 - -
Seca4g01856 441 SUPERFAMILY EF-G C-terminal domain-like 380 440 IPR035647 -
Seca4g01856 441 FunFam Translation factor GUF1, mitochondrial 274 372 - -
Seca4g01856 441 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 131 146 IPR031157 -
Seca4g01856 441 CDD EF4_III 381 440 - -
Seca4g01856 441 Gene3D Elongation Factor G (Translational Gtpase), domain 3 374 441 - -
Seca4g01856 441 Pfam Elongation factor Tu GTP binding domain 92 269 IPR000795 GO:0003924|GO:0005525
Seca4g01856 441 PANTHER TRANSLATION FACTOR GUF1-RELATED 71 440 IPR006297 GO:0005525
Seca4g01856 441 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 91 272 IPR000795 GO:0003924|GO:0005525
Seca4g01856 441 Pfam Elongation factor Tu domain 2 293 363 IPR004161 GO:0005525
Seca4g01856 441 CDD EF4_II 279 364 - -
Seca4g01856 441 PRINTS GTP-binding elongation factor signature 162 172 IPR000795 GO:0003924|GO:0005525
Seca4g01856 441 PRINTS GTP-binding elongation factor signature 95 108 IPR000795 GO:0003924|GO:0005525
Seca4g01856 441 PRINTS GTP-binding elongation factor signature 138 146 IPR000795 GO:0003924|GO:0005525
Seca4g01856 441 PRINTS GTP-binding elongation factor signature 178 189 IPR000795 GO:0003924|GO:0005525
Seca4g01856 441 PRINTS GTP-binding elongation factor signature 214 223 IPR000795 GO:0003924|GO:0005525
Seca4g01856 441 Hamap Elongation factor 4 [lepA]. 88 441 IPR006297 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01856 Seca-Chr4 31114012 31119724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01856 92 326 Eukaryotic Initiation Factors Gene Family AT3G22980 34.274 4.22e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01856 K21594 - gmx:100809693 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01856 4 31114012 31119724 Seca4g01856 4 31114012 31119724 ECH