Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01850 ATGAACTTTCCAACTCCAACTCATGCTTCCTCATCACCATCTTCTTCTTCTTCCACCTATCCGCTTCGTCATCCTCCATGCCTCACTCATGCTTCTCGTAACTTCAAGTGTCCTCTGATGTTCCAACAGGCAATATGGACCTCTCAAAAGATGTACCCCTGCTCTGGAGCCAATGTGGAGGCTTCTCTTAACACTAATCCCCTGAAATTTAGCATTGCAGCCAGATGTTCTTCACGGTGGTCAGAAGCACAACCCTTGGCTTCTAACCAATCACTCAACAAACGCTTGTTCTCAGTGGGAGCTTTGGTAACTCCAACAACTCAAGATGTTTCTGCTACAGATCTTATTGGTGATGAGAAGATTGGAGTGTTATTGCTAAACCTTGGAGGTCCAGAGACTCTAGAAGATGTGCAGCCTTTTTTGTTTAACCTTTTTGCTGACCCGGATATTATACGATTGCCAAGAATATTTAGTTTTCTCCAAAAGCCATTGGCCCAATTTGTATCTGTTCTAAGGGCCCCAAAGAGCAGAGAAGGCTATGCTTCAATTGGTGGTGGCTCTCCTCTTAGACGTATAACTGATGCACAGGCTGAAGAGTTGAGGAAATCTCTTTGGGAAAAGAATGTCCCCGCTAAAGTGTATGTTGGCATGCGTTACTGGCATCCATTCACTGAAGAAGCTATTGAACAGATTAAAAGGGATGGAATTACAAAGCTTGTTGTCCTTCCACTTTATCCACAATTTTCCATATCAACCAGTGGCTCAAGCCTACGTCTACTGGAGAGTATATTCCGAGAGGATGAGTATCTAGTCAACATGCAGCACACAGTAATACCCTCATGGTATCAACGTGAAGGATACATAAAAGCTATGGCAAATTTAATTGAAAAGGAGCTGAAGAGTTTTGACTGTCCTGAGGAGGTCACAATCTTCTTCAGTGCACATGGAGTTCCTCTTGCTTATGTGGAAGAAGCCGGAGATCCATACAGAGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAACTTGAGACAAGAAAGATAACTAATGCCTTCACCCTTGCTTACCAGAGTAGAGTTGGACCAGTGGAATGGTTAAAACCCTATACAGACGAGACAATAGTTGAACTTGGAAAAAGGGGAGTGAAAAGTCTGCTGGCTGTTCCAATTAGCTTTGTCAGTGAGCATATTGAAACACTAGAAGAAATTGATGTTGAATACAAAGAATTGGCTCTACAATCTGGTATAGAAAACTGGGGAAGAGTTCCTGCTCTAGGATGTGAAGCCACATTCATTTCTGACTTGGCAGATGCTGTTATTGAAAGTCTCCCATATGTAGGTGCCATGGCAGTTTCAAACCTTGAAGCTAGACAGTCTTTGGTTCCCCTGGGCAGTGTAGAAGAGTTATTGGCAGCGTATGACTCACAACGTCGAGAGTTGCCACCACCAGTTATAGTGTGGCAATGGGGTTGGACAAAAAGTGCTGAAACTTGGAATGGAAGAACAGCTATGCTTGCTGTGCTGCTTCTTTTAATTTTAGAAGTCACTTCAGGTGATGGTTTTCTGCACCAGTGGGGATTATTGCCCTTGCTTAGGTGA 1602 0.4351 MNFPTPTHASSSPSSSSSTYPLRHPPCLTHASRNFKCPLMFQQAIWTSQKMYPCSGANVEASLNTNPLKFSIAARCSSRWSEAQPLASNQSLNKRLFSVGALVTPTTQDVSATDLIGDEKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRIFSFLQKPLAQFVSVLRAPKSREGYASIGGGSPLRRITDAQAEELRKSLWEKNVPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYIKAMANLIEKELKSFDCPEEVTIFFSAHGVPLAYVEEAGDPYRAEMEECVDLIMEELETRKITNAFTLAYQSRVGPVEWLKPYTDETIVELGKRGVKSLLAVPISFVSEHIETLEEIDVEYKELALQSGIENWGRVPALGCEATFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAAYDSQRRELPPPVIVWQWGWTKSAETWNGRTAMLAVLLLLILEVTSGDGFLHQWGLLPLLR. 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01850 533 ProSitePatterns Ferrochelatase signature. 310 331 IPR019772 GO:0004325|GO:0006783
Seca4g01850 533 Hamap Coproporphyrin III ferrochelatase [cpfC]. 119 444 IPR001015 GO:0004325|GO:0006783
Seca4g01850 533 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g01850 533 SUPERFAMILY Chelatase 119 450 - -
Seca4g01850 533 SUPERFAMILY Chlorophyll a-b binding protein 488 528 - -
Seca4g01850 533 Gene3D - 282 425 - -
Seca4g01850 533 Gene3D - 120 443 - -
Seca4g01850 533 NCBIfam ferrochelatase 119 444 IPR001015 GO:0004325|GO:0006783
Seca4g01850 533 CDD Ferrochelatase_C 289 427 IPR033644 -
Seca4g01850 533 CDD Ferrochelatase_N 121 283 IPR033659 -
Seca4g01850 533 PANTHER FERROCHELATASE 116 470 IPR001015 GO:0004325|GO:0006783
Seca4g01850 533 FunFam Ferrochelatase 120 298 - -
Seca4g01850 533 Pfam Ferrochelatase 120 443 IPR001015 GO:0004325|GO:0006783
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01850 Seca-Chr4 30915357 30921378 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01850 K01772 - gmx:100803481 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01850 4 30915357 30921378 Seca4g01850 4 30915357 30921378 ECH
Seca12g06355 12 155518611 155534539 Seca4g01850 4 30915357 30921378 PCT