Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01847 ATGGATAAGTACGAGGCCGTGAAGGATTTGGGAGCTGGTAATTTTGGGGTGGCCAGGCTTATGAGGAACAAGGTCACCAAGGAACTCGTCGCCATGAAATACATCGAGCGTGGCCACAAGATTGATGAGAACGTGGCAAGGGAGATTATGAACCACAGGTCCCTTCGGCATCCCAATATAATTCGTTTCAAGGAGGCAGGGAATTCGCTTCTTTTCTTTGTGGTTTTGACTCCCACACATTTAGCAATAGTAATGGAGTATGCAGCTGGAGGAGAGCTCTTTGAGAGGATATGCAATGCTGGAAGGTTCAGTGAAGATGAGGCCAGATATTTCTTTCAGCAGTTGATATCCGGTGTCCACTTCTGTCATACCATGCAAATATGCCACAGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCACCTCGCTTAAAGATTTGTGACTTTGGTTATTCTAAGTCATCTTTGCTGCATTCACGACCCAAATCAACTGTTGGAACACCAGCTTATATAGCACCAGAGGTTCTTTCTAGGAGGGAGTATGATGGAAAGATGGCTGATGTATGGTCATGTGGGGTAACTCTTTATGTCATGCTGGTTGGAGCTTATCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGAATAATGGCTATTCAGTACAAAATCCCTGATTATGTTCACATATCTCAAGATTGCAGACACCTCATTTCTCGTATATTTGTTGCAAATCCGTTGAGGAGAATTACTCTTAAGGAAATTAAGAACCACCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTATCTATTACCAAAGAGACAATCCAAACTTTCATCTTCAAGGTGTGGACGAGATAATGAAAATTGTGGGAGAGGCAAGAAACCCACCTCCAGTATCTAGGCCTGTCAAAGGTTTTGGCTGGGAAGGTGAAGGTGAAGATGATGAAGGGGCAGAAGATTTGGATGGAGAAGTGGAGGAAGAGGAGGATGAAGATGAGTACGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTCAAAATTAGTTAA 1095 0.4301 MDKYEAVKDLGAGNFGVARLMRNKVTKELVAMKYIERGHKIDENVAREIMNHRSLRHPNIIRFKEAGNSLLFFVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKMADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAIQYKIPDYVHISQDCRHLISRIFVANPLRRITLKEIKNHPWFLKNLPRELTESAQAIYYQRDNPNFHLQGVDEIMKIVGEARNPPPVSRPVKGFGWEGEGEDDEGAEDLDGEVEEEEDEDEYDKRVKEVHASGEFKIS. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01847 364 MobiDBLite consensus disorder prediction 349 364 - -
Seca4g01847 364 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca4g01847 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Seca4g01847 364 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Seca4g01847 364 FunFam Serine/threonine-protein kinase SRK2E 1 87 - -
Seca4g01847 364 FunFam Serine/threonine-protein kinase SRK2A 88 276 - -
Seca4g01847 364 MobiDBLite consensus disorder prediction 311 364 - -
Seca4g01847 364 Gene3D Transferase(Phosphotransferase) domain 1 88 275 - -
Seca4g01847 364 PANTHER SERINE/THREONINE KINASE 3 303 - -
Seca4g01847 364 SUPERFAMILY Protein kinase-like (PK-like) 1 289 IPR011009 -
Seca4g01847 364 ProSiteProfiles Protein kinase domain profile. 4 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01847 364 Pfam Protein kinase domain 4 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01847 364 SMART serkin_6 4 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01847 364 MobiDBLite consensus disorder prediction 326 348 - -
Seca4g01847 364 CDD STKc_SnRK2 3 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01847 Seca-Chr4 30780357 30784330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01847 3 314 CBL-interacting serine-threonine protein kinases AT2G26980 37.805 1.47e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca4g01847 Pkinase 1.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01847 K14498 - gmx:547811 635.565