Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01845 ATGGAGAGGAAATCACTTGGATTGTTCTTCTTCTTGCTCCTCATTGCCTTTGCTTCTCCAGAAATGGTGGTGCAGACAGAGGGAAGAATGTGTGAGTCACAGAGCCACAGGTTTAAGGGAGCCTGTTTGGGAGACCACAACTGTGCCTTGGTCTGCAGGAACGAAGGTTTCTCCGGTGGCAGATGCCGAGGGTTCCGCCACCGCTGCTTTTGCACCAGACTTTGTTCAACTTGA 234 0.5128 MERKSLGLFFFLLLIAFASPEMVVQTEGRMCESQSHRFKGACLGDHNCALVCRNEGFSGGRCRGFRHRCFCTRLCST. 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01845 77 Gene3D - 29 75 IPR036574 -
Seca4g01845 77 SMART gth_4 30 75 IPR003614 GO:0006952
Seca4g01845 77 PANTHER DEFENSIN-LIKE PROTEIN 1 6 72 - -
Seca4g01845 77 Pfam Gamma-thionin family 29 75 - -
Seca4g01845 77 PRINTS Purothionin signature 30 45 IPR008176 GO:0006952
Seca4g01845 77 PRINTS Purothionin signature 60 74 IPR008176 GO:0006952
Seca4g01845 77 SUPERFAMILY Scorpion toxin-like 29 75 IPR036574 -
Seca4g01845 77 ProSitePatterns Gamma-thionins family signature. 29 52 IPR008176 GO:0006952
Seca4g01845 77 CDD Knot1 40 72 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01845 Seca-Chr4 30739674 30740437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01845 1 75 Plant Defensins Gene Families AT5G63660 61.333 1.21e-26 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01845 - - vvi:100252765 118.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01845 4 30739674 30740437 Seca4g01845 4 30739674 30740437 ECH