Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01844 ATGGACCACAAGGCACGATTTGGGCTTTTCTTCATGTTGCTCATTCTCCTTGCTTCTCCAGAGATGGTGGTGCAAACGGAGGGAAGGCACTGTGAGTCAAAGAGCCATCGATTTAAAGGGTTGTGTTTCAGCGATCATAACTGCGCTTCGGTTTGCCATCTTGAAGGCTTCACAGGTGGTAAATGCCGTGGTTTCCGTCAACGCTGCTTCTGCACCAAACGTTGTTAG 228 0.4912 MDHKARFGLFFMLLILLASPEMVVQTEGRHCESKSHRFKGLCFSDHNCASVCHLEGFTGGKCRGFRQRCFCTKRC. 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01844 75 PANTHER DEFENSIN-LIKE PROTEIN 1 5 75 - -
Seca4g01844 75 Pfam Gamma-thionin family 29 75 - -
Seca4g01844 75 Gene3D - 29 75 IPR036574 -
Seca4g01844 75 SMART gth_4 30 75 IPR003614 GO:0006952
Seca4g01844 75 PRINTS Purothionin signature 60 74 IPR008176 GO:0006952
Seca4g01844 75 PRINTS Purothionin signature 30 45 IPR008176 GO:0006952
Seca4g01844 75 SUPERFAMILY Scorpion toxin-like 29 75 IPR036574 -
Seca4g01844 75 ProSitePatterns Gamma-thionins family signature. 29 52 IPR008176 GO:0006952
Seca4g01844 75 CDD Knot1 40 72 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01844 Seca-Chr4 30733815 30734518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01844 10 75 Plant Defensins Gene Families AT2G02130 59.091 7.77e-25 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01844 - - gmx:100788332 138.658