Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01843 ATGGGTAGATCTCCTTGTTGTGAGAAAGAACACACGAACAAAGGAGCTTGGACCAAAGAAGAAGATGAACGCCTCATAAACTACATCAAGATTCACGGTGAAGGCTGTTGGAGATCCCTTCCTAAAGCTGCTGGCTTGTTGAGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTACCTCAGACCTGATCTCAAGAGAGGAAATTTCACTGAAGAAGAAGATGAACTCATCATTAACCTCCACAGCTTACTTGGAAACAAATGGTCTCTAATAGCTGCGAGGTTACCAGGTAGAACTGATAATGAGATCAAGAATTATTGGAACACTCACATCAAGCGAAAACTCTATAGCCGCGGAATCGACCCCCAAACTCATCGGCCACTTAACGCCTCAGCCACCGTCACTACATCTCCACTTGCTAATGCTGCAGTCTCCACAAGCAATAAGAAGATGAGCGATAACGGCAATAGCATTATTAGCAGCAACAACCATAACAATAATAACAGTTTTCAGTTAGTGAGTGGTTACGCCAATACCAAGACCGTAACTGAATTTGTTGGTGAAGATTCAAATAGCAGCAGTGGCGTTACATCATCAGAGGAAGGCTATCCTCATCAACTCAACTTGGACCTTTCCATTGGCCTTCCTTCTCAACCCCAAGTTTCTAAGTTGAAACAACAACAACAAATTAAGATTGAGCAACAAGAACCACATGTTTTGTATCAGTGGTATGGGAATGTTACTAGTCAAGGTGTGTGCCTGTGTTATGGTCTAGGGTTTCAAAGCAAGCAAGCATGTAGCTGTAAAGCCATGGGTGCTTCTACTACAACTGCCACAGATAATAATCTGTATAGATTTTATAGACCCATGAATATTTAG 882 0.4218 MGRSPCCEKEHTNKGAWTKEEDERLINYIKIHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNASATVTTSPLANAAVSTSNKKMSDNGNSIISSNNHNNNNSFQLVSGYANTKTVTEFVGEDSNSSSGVTSSEEGYPHQLNLDLSIGLPSQPQVSKLKQQQQIKIEQQEPHVLYQWYGNVTSQGVCLCYGLGFQSKQACSCKAMGASTTTATDNNLYRFYRPMNI. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01843 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca4g01843 293 CDD SANT 69 112 IPR001005 -
Seca4g01843 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca4g01843 293 Gene3D - 68 136 - -
Seca4g01843 293 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca4g01843 293 CDD SANT 16 61 IPR001005 -
Seca4g01843 293 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 218 - -
Seca4g01843 293 FunFam Myb transcription factor 68 137 - -
Seca4g01843 293 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca4g01843 293 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g01843 293 Gene3D - 14 66 - -
Seca4g01843 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca4g01843 293 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Seca4g01843 293 SMART sant 13 63 IPR001005 -
Seca4g01843 293 SMART sant 66 114 IPR001005 -
Seca4g01843 293 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01843 Seca-Chr4 30719051 30720970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01843 1 218 MYB Transcription Factor Family AT4G09460 61.991 4.17e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g01843 Myb_DNA-binding 8.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01843 K09422 - gmx:100808083 431.409