Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01839 ATGGAATTATCAATAGCTGTTAATACTTCCCTGATTGCACTGGCACGACGTGGAATTTTTTGCACAGAACCTTTTAGAATTCCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACTGGAACGCTTACATCTGATGACATGGAATTTTCTGGAGTTGTTGGGTTGTCAGGAACTACAGATTTGGAATCTGATATGAGTAGAGTGCCTGTGCGAACAGTAGAAATTCTGGCTTCTTGCCATGCATTGGTATTTGTTGAGAATAAACTGGTTGGTGATCCTCTCGAGAAGGCTGCCCTTAAGGGAATCGATTGGAGTTATAAATCTGATGAGAAGGCTATTCCAAAAAAGGGAAATGGCCATCCTGTCCAAATTGTTCAGCGGTATCATTTTGCATCTCACTTAAAACGAATGGCAGTTATTGTTCGAATTCAGGAGGAATTTTTTGCCTTTGTGAAGGGTGCCCCAGAAATTATACAAGAAAGGCTCACTGATATACCACCATCATATGTTGAGACCTACAAAAAATATACACGTCAAGGGTCTCGGGTTCTTGCTCTGGCATACAAGTCTCTTTCTGACATGACAGTCAGTGAAGCTAGAAGCTTGGATAGGGATATGGTGGAGAGTGGACTTACTTTTGCAGGTTTTGTGGTATTTAATTGTCCCATAAGATCAGATTCAGCCACTATTTTATCTGAATTGAAAGGATCTTCACACGACTTGGTGATGATTACTGGTGACCAAGCTTTGACAGCTTGTCATGTTGCTAGCCAAGTTCATATCATATCAAAGCCTACACTGATCCTTGGTCCAGCAAGTAATGGTGAAGGATATAATTGGGTGTCGCCTGATGAGATTGAAAACATTCGCTACAGTGAGAAAGAGGTTGAATCTTTATCAGAAACTCATGATCTTTGTGTTGGAGGTGATTGCATTGAGATGTTGCAACAGACATCAGCTCATCTTCTAGTCATTCCTCATGTGAAGGTTTTTGCTAGAGTTGCTCCTGAGCAAAAGGAACTTATTATGACCACTTTCAAAACAGTGGGACGGGTAACTTTGATGTGTGGGGATGGAACCAATGATGTTGGAGCTTTGAAGCAGGCCGATGTAGGAGTAGCTCTTCTGAATGCAGTTCCTCCTACAAAAAGTGGAAACTCCTCTACAGATTCATCTGGGGAAGACGGTTCAAAATCTGTCAAGCAAAAGAAATCTAAGCCTGCACTGGAAACATCTGGAAAGACAGTTAGCCCAATTGGAGAAGGCACTTCAAAAGCCAAAGTTGCTTCAAAATCAGATTCCACCAGCCATTCATCTGGTAACCGTCATCAGGCAGCTGTTGAGATGCAAAAACAGAAGCTTAAGAAGATGATTGATGAGCTTAATGAGGAAGGAGATGGTCGTGCACCCATTGTCAAGCTTGGTGATGCCTCAATGGCTTCTCCATTCACTGCAAAGCATGCATCTGTTGCTCCCACCACTGATATAATTCGTCAAGGTCGGAGTACCCTAGTGACAACCCTCCAGATGTTTAAAATTCTCGGCCTCAACTGCCTTGCTACTGCCTATGTGTTGAGTGTTATGTATCTGGATGGTGTCAAGCTAGGTGATATACAAGCCACAATAAGTGGTGTCTTTACTGCTGCTTTTTTCCTCTTCATATCACATGCACGCCCTCTTCCCACTCTCTCAGCTGAACGCCCCCACCCTAACATCTTCTGTGCTTATGTCTTCCTTTCCCTCTTGGGACAATTTTCTATTCACTTGCTTTTTCTGATTTCATCTGTGAGAGAAGCTGAAAAACACATGCCAGATGAATGCATTGAACCTGATTCAGATTTTCATCCTAACCTGGTAAATACTGTTTCCTACATGGTGGGCATGATGCTTCAGGTGGCCACATTTGCCGTGAACTACATGGGCCATCCCTTTAACCAGAGTATTCCTGAAAACAAACCATTCCTCTACGCACTTGCTGCTGCTGTTGGTTTCTTTACTGTGATTACATCTGATCTCTTCAGGGACTTAAATGACTGGTTGAAACTGGTGCCATTGCCAGTAGGTTTAAGGAATAAACTATTGCTTTGGGCATTTCTAACGTTTGTTGTATGCTATTCATGGGAGAGACTATTGAGGTGGGCCTTCCCTGGTAAGATTCCAGCTTGGAAGAAGCGACAACGGGTTGCTGTATCTAATTTAGAAAAGAAGAAGCAGCTCTAA 2226 0.4259 MELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLSGTTDLESDMSRVPVRTVEILASCHALVFVENKLVGDPLEKAALKGIDWSYKSDEKAIPKKGNGHPVQIVQRYHFASHLKRMAVIVRIQEEFFAFVKGAPEIIQERLTDIPPSYVETYKKYTRQGSRVLALAYKSLSDMTVSEARSLDRDMVESGLTFAGFVVFNCPIRSDSATILSELKGSSHDLVMITGDQALTACHVASQVHIISKPTLILGPASNGEGYNWVSPDEIENIRYSEKEVESLSETHDLCVGGDCIEMLQQTSAHLLVIPHVKVFARVAPEQKELIMTTFKTVGRVTLMCGDGTNDVGALKQADVGVALLNAVPPTKSGNSSTDSSGEDGSKSVKQKKSKPALETSGKTVSPIGEGTSKAKVASKSDSTSHSSGNRHQAAVEMQKQKLKKMIDELNEEGDGRAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPNIFCAYVFLSLLGQFSIHLLFLISSVREAEKHMPDECIEPDSDFHPNLVNTVSYMVGMMLQVATFAVNYMGHPFNQSIPENKPFLYALAAAVGFFTVITSDLFRDLNDWLKLVPLPVGLRNKLLLWAFLTFVVCYSWERLLRWAFPGKIPAWKKRQRVAVSNLEKKKQL. 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01839 741 FunFam Cation-transporting ATPase 218 393 - -
Seca4g01839 741 SFLD C1.7: P-type atpase like 18 504 - -
Seca4g01839 741 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 43 227 IPR023299 GO:0000166
Seca4g01839 741 FunFam Cation-transporting ATPase 33 217 - -
Seca4g01839 741 MobiDBLite consensus disorder prediction 380 451 - -
Seca4g01839 741 NCBIfam P-type ATPase of unknown pump specificity (type V) 1 698 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Seca4g01839 741 Coils Coil 446 466 - -
Seca4g01839 741 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 718 IPR023298 -
Seca4g01839 741 NCBIfam HAD-IC family P-type ATPase 329 377 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g01839 741 NCBIfam HAD-IC family P-type ATPase 125 264 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g01839 741 SUPERFAMILY HAD-like 32 385 IPR036412 -
Seca4g01839 741 ProSitePatterns E1-E2 ATPases phosphorylation site. 39 45 IPR018303 -
Seca4g01839 741 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 717 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Seca4g01839 741 SFLD p-type atpase 18 504 IPR044492 -
Seca4g01839 741 MobiDBLite consensus disorder prediction 382 397 - -
Seca4g01839 741 Pfam haloacid dehalogenase-like hydrolase 34 262 - -
Seca4g01839 741 MobiDBLite consensus disorder prediction 429 448 - -
Seca4g01839 741 ProSitePatterns Hypothetical cof family signature 2. 358 380 - -
Seca4g01839 741 Gene3D - 218 391 IPR023214 -
Seca4g01839 741 PRINTS P-type cation-transporting ATPase superfamily signature 358 377 - -
Seca4g01839 741 PRINTS P-type cation-transporting ATPase superfamily signature 37 51 - -
Seca4g01839 741 PRINTS P-type cation-transporting ATPase superfamily signature 239 249 - -
Seca4g01839 741 Gene3D - 32 217 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01839 Seca-Chr4 30555698 30571538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01839 1 741 Primary Pumps ATPases AT5G23630 76.312 0.0 1162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01839 K14950 - gmx:100789385 1367.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01839 4 30555698 30571538 Seca4g01839 4 30555698 30571538 ECH