Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01833 ATGTCGAAATCCAACACTGCCACCACCACGCTACCACCGAAACCCACATGGGTCCTCCCATATCGAACGGAGAACCTGAGAGAAGTGTACACTTTGGGGAGAAAACTGGGTCAGGGTCAATTTGGCACCACATACCTTTGCAGACACAACTCCACGGGTCGCACCTATGCTTGCAAGTCAATCCCGAAACGGAAGCTGTTATGCAAAGAGGACTACGATGATGTGTGGAGGGAGATTCAGATAATGCACCATTTGTCTGAGCAACCCAATGTTGTGAGGATCCATGGCACCTATGAGGACTCTTCCTCTGTTCACTTGGTCATGGAGCTTTGTGAAGGTGGTGAGTTGTTCGATAGGATCGTGAAAAAGGGGCATTACAGTGAGAGACAAGCTGCTAAGTTGATAAAGACTATTGTTGAGGTTGTGGAGGCTTGTCATTCTCTTGGGGTTATGCATAGAGACCTTAAACCTGAGAACTTCTTGTTTGACACTGTTGAAGAGGATGCTAAACTCAAAACCACTGATTTTGGATTGTCTGTTTTTTACAAGCCAGGTGAAACCTTTAGTGATGTTGTTGGAAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCATTATGGACCTGAATTAGACGTATGGAGTGCTGGGGTTATTTTGTACATCTTACTAAGCGGGGTTCCGCCATTTTGGGCTGAAACGGAGCAGGGGATCTTCCGACAGATTTTGCTGGGAAGACTTGATTTCCAGTCTGAGCCATGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGAAAAATGCTTGATCGGAATCCAAAAACAAGGCTTACAGCTCATCAAGTACTCTGTAATGGAATAAGATTGAAGGCTGTGGTACTAATGTGGTTTTCTGTGTCAGGCCACCCATGGATCGTTGATGACAACATTGCACCGGATAAACCTCTTGATTCTGCTGTTTTATCACGCCTGAAGCAGTTCTCTGCAATGAATAAACTTAAAAAGATGGCTTTGCGTGTTATTGCGGAGAGGCTTTCTGAGGAAGAAATTGGTGGTCTGAAGGAGTTATTCAAAATGATTGATGCTGACAACAGTGGAACTATAACATTTGATGAGCTCAAAGAAGGCTTAAAGCGAGTAGGATCCGAGCTTATGGAGTCTGAAATAAAGGATCTTATGGATGCAGCAGATATTGATAACAGTGGGACTATTGACTATGGTGAATTCATTGCTGCTACGGTGCACTTAAATAAGCTGGAGAGAGAGGAGAATCTATTATCAGCATTCTCCTATTTTGACAAAGATGGAAGTGGTTACATAACCATTGATGAGATACAACAAGCTTGTAAGGAGTTTGGTTTGGATGATGTCCATATTGATGAAATGGTCAAGGAAATTGATCAAGACAATGATGGACAGATAGATTATGGGGAATTTGCAGCCATGATGAGAAAGGGCAATGGAGGGATCGGAAGGAGAACCATGAGAAGCACACTCAATTTCAGAGATGCTCTGGGAATCATAGACAATGGGTCCAATTAA 1542 0.4371 MSKSNTATTTLPPKPTWVLPYRTENLREVYTLGRKLGQGQFGTTYLCRHNSTGRTYACKSIPKRKLLCKEDYDDVWREIQIMHHLSEQPNVVRIHGTYEDSSSVHLVMELCEGGELFDRIVKKGHYSERQAAKLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVEEDAKLKTTDFGLSVFYKPGETFSDVVGSPYYVAPEVLRKHYGPELDVWSAGVILYILLSGVPPFWAETEQGIFRQILLGRLDFQSEPWPSISDSAKDLIRKMLDRNPKTRLTAHQVLCNGIRLKAVVLMWFSVSGHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDADNSGTITFDELKEGLKRVGSELMESEIKDLMDAADIDNSGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKEFGLDDVHIDEMVKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRSTLNFRDALGIIDNGSN. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01833 513 FunFam Calcium-dependent protein kinase SK5 418 513 - -
Seca4g01833 513 CDD EFh 353 412 IPR002048 GO:0005509
Seca4g01833 513 FunFam calcium-dependent protein kinase SK5 342 414 - -
Seca4g01833 513 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 479 - -
Seca4g01833 513 ProSitePatterns EF-hand calcium-binding domain. 467 479 IPR018247 -
Seca4g01833 513 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Seca4g01833 513 Pfam EF-hand domain pair 423 484 IPR002048 GO:0005509
Seca4g01833 513 Pfam EF-hand domain pair 353 413 IPR002048 GO:0005509
Seca4g01833 513 Gene3D Phosphorylase Kinase; domain 1 32 115 - -
Seca4g01833 513 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Seca4g01833 513 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
Seca4g01833 513 SMART efh_1 424 452 IPR002048 GO:0005509
Seca4g01833 513 SMART efh_1 458 486 IPR002048 GO:0005509
Seca4g01833 513 SMART efh_1 352 380 IPR002048 GO:0005509
Seca4g01833 513 SMART efh_1 388 416 IPR002048 GO:0005509
Seca4g01833 513 FunFam Calcium-dependent protein kinase SK5 198 290 - -
Seca4g01833 513 FunFam CDPK-related kinase 3 22 190 - -
Seca4g01833 513 CDD EFh 425 484 IPR002048 GO:0005509
Seca4g01833 513 ProSiteProfiles EF-hand calcium-binding domain profile. 458 489 IPR002048 GO:0005509
Seca4g01833 513 Gene3D - 298 486 - -
Seca4g01833 513 SUPERFAMILY EF-hand 344 485 IPR011992 -
Seca4g01833 513 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Seca4g01833 513 Gene3D Transferase(Phosphotransferase) domain 1 116 289 - -
Seca4g01833 513 SMART serkin_6 30 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01833 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Seca4g01833 513 CDD STKc_CAMK 29 304 - -
Seca4g01833 513 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Seca4g01833 513 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Seca4g01833 513 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
Seca4g01833 513 FunFam Calcium-dependent protein kinase 1 32 115 - -
Seca4g01833 513 Pfam Protein kinase domain 30 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01833 513 ProSiteProfiles Protein kinase domain profile. 30 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01833 513 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01833 Seca-Chr4 30451963 30457433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01833 12 513 EF-hand Containing Proteins AT4G09570 75.296 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca4g01833 Pkinase 1.9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01833 K13412 - gmx:100790443 946.036