Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01805 ATGGATCCGGACGCATTCACCGCCAGCCTATTCAAGTGGGACCCGCGCACCGTCCTTCCACCTCCCGCGGCCACACGTCCCCCTCTCCTCGACTACGCGGTTGCTCCGCCAGTGGCCGCGACGGCGGCGTATCATCCGGCGAGAGCGCCGAGGGAGTTGGAGGAACTGTTCCAAGCTTACGGCATCAGATACTACACGGCGGCGAAGATAGCGGAGCTTGGTTTCACGGCGAGCACGCTGGTGGACATGAAGGACGAGGAGTTGGACGACATGATGAACAGCCTCTCCCAGATTTTCCGATGGGATCTCCTCGTCGGCGAGCGTTACGGCATCAAAGCCGCCGTCAGAGCCGAACGAAGACGCGTCGACGACGAGGACATGAAGCGCCGTAACCTCCTCTCCACCGACACAACCACCAACGCACTCGATGCTCTCTCTCAAGAAGGTTTGTCGGAGGAGCCGGTGGTGCAACGAGAAAGGGAGGTAGTGGGAAGCGGGGGAGGGAGCACGTGGGAGGTAGTGGCGGCGGAGGAGAGGAGGAAGCAGCAGCAGATGAGGAGGAGGAAGGCAAGGATGAAGAGGAATGCTGAGGAGAATGAAGAAGTGGAAGAGGAGGAAGGAGAAGAGAATGATGAAGGGAACAACAACAGTGGTGGTGGTGGTTGTGAGAGGCAAAGAGAGCATCCATTCATTGTGACTGAGCCTGGGGAGGTTGCACGTGGCAAGAAGAATGGTCTTGACTATCTCTTTCACCTCTACGAGCAATGCCGTGAGTTCTTGATCCAGGTTCAGGCCATCGCCAAGGACCGCGGTGAAAAATGCCCAACCAAGGTGACAAATCAGGTATTTAGGTACGCGAAGAAGGCTGGAGCTAGCTACATCAACAAGCCGAAAATGCGACACTACGTGCATTGCTACGCGTTGCATTGTCTTGACGAGGAGGTGTCAAATGAGCTGAGAAGGGGTTTCAAGGAGAGAGGGGAGAATGTAGGAGCATGGAGGCAAGCTTGTTACAAGCCCCTTGTGGCCATAGCAGCACGTCAAGGTTGGGACATTGATGCCATATTCAATGCGCATCCTCGTCTTTCCATATGGTATGTGCCAACAAAGCTCCGTCAGCTTTGTCATGCCGAGAGGAACAGCGCCGCCGCTTCTAGCTCCGTCTCTGTTGGCAGCGGCCACCTTCCGTTCTAA 1194 0.5628 MDPDAFTASLFKWDPRTVLPPPAATRPPLLDYAVAPPVAATAAYHPARAPRELEELFQAYGIRYYTAAKIAELGFTASTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVDDEDMKRRNLLSTDTTTNALDALSQEGLSEEPVVQREREVVGSGGGSTWEVVAAEERRKQQQMRRRKARMKRNAEENEEVEEEEGEENDEGNNNSGGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSVGSGHLPF. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01805 397 PANTHER PROTEIN LEAFY 1 396 IPR002910 GO:0003677|GO:0006355
Seca4g01805 397 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 217 383 IPR035209 GO:0003677
Seca4g01805 397 Coils Coil 173 212 - -
Seca4g01805 397 MobiDBLite consensus disorder prediction 138 225 - -
Seca4g01805 397 Pfam Floricaula / Leafy protein SAM domain 50 126 IPR035079 -
Seca4g01805 397 Gene3D Protein LEAFY 220 389 IPR038276 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01805 Seca-Chr4 29877165 29879648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01805 1 392 Orphan Transcription Factor Family AT5G61850 64.951 2.16e-161 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Seca4g01805 C_LFY_FLO 2.6e-109 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01805 - - gsj:114416001 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01805 4 29877165 29879648 Seca4g01805 4 29877165 29879648 ECH