Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01801 ATGGATAGAAGGACATATTCTTCCGAAGAAGGGCAACAAGAAGAGGAAATTTTGTTCCCAATATATTCTGAAAGGTCTCAGCAAGACATGTCAGCTATGGTCTCAGCCCTTACACAAGTCATTGGTGGAACCAACAATAACCCACTTCAGCTGAATGAACATCATTCAAGTTCAACTGCTTCCCATTCCAGCTCAACTCAGAATGAACAATCCCAAGCACCACAGCAAGATCAAGGGAGTGTTAGAAGAAGACACTATAGAGGGGTGAGGCAGCGTCCATGGGGGAAGTGGGCTGCAGAGATTCGTGATCCAAAGAAGGCAGCAAGGGTATGGCTTGGAACTTTTGAAACTGCTGAAGCTGCTGCTCTTGCTTATGATGAAGCTGCTCTTAGATTCAAAGGAAGCAAAGCAAAGCTCAATTTTCCTGAAAGGGTTCAAGGCACAGCTGAATATGGCTACCTCACTAATCAAGAATTTCATAATGATCGTCAACAACAACCATCTAACCCGGTTCCTGTTGGTTTCCATCCACACTATTCTCAAGAAACGTATTCAACAAGCCATCCCTTTCAATATGCACAAGTTCCTGGTGGTGGGAGTGGCAACTTCAATAATCAACAAGATATGCTTCGTTTCTATGGGAGAGATGACATGTTTGTTTCTTCTTCTTCATCATCATCATCTTCTCAACTATCTGATCAGCAGCAACAAGAGCTTCTGAGATTTTCGATGCAATTTGGAGGTTCTTCTTCTTCTTCTGAGCCACCTAGGAATTGGAGGGGATGA 786 0.4338 MDRRTYSSEEGQQEEEILFPIYSERSQQDMSAMVSALTQVIGGTNNNPLQLNEHHSSSTASHSSSTQNEQSQAPQQDQGSVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTAEYGYLTNQEFHNDRQQQPSNPVPVGFHPHYSQETYSTSHPFQYAQVPGGGSGNFNNQQDMLRFYGRDDMFVSSSSSSSSSQLSDQQQQELLRFSMQFGGSSSSSEPPRNWRG. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01801 261 Gene3D AP2/ERF domain 84 144 IPR036955 GO:0003700|GO:0006355
Seca4g01801 261 PANTHER DNA-BINDING DOMAIN 55 230 IPR044808 GO:0003700|GO:0009873
Seca4g01801 261 Pfam AP2 domain 85 134 IPR001471 GO:0003700|GO:0006355
Seca4g01801 261 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Seca4g01801 261 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Seca4g01801 261 FunFam Ethylene-responsive transcription factor 2 84 143 - -
Seca4g01801 261 CDD AP2 85 143 IPR001471 GO:0003700|GO:0006355
Seca4g01801 261 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Seca4g01801 261 MobiDBLite consensus disorder prediction 220 261 - -
Seca4g01801 261 MobiDBLite consensus disorder prediction 42 89 - -
Seca4g01801 261 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g01801 261 MobiDBLite consensus disorder prediction 42 79 - -
Seca4g01801 261 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Seca4g01801 261 SUPERFAMILY DNA-binding domain 85 143 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01801 Seca-Chr4 29658690 29660762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01801 18 157 AP2-EREBP Transcription Factor Family AT5G61890 64.828 7.52e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g01801 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01801 - - gmx:100787091 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01801 4 29658690 29660762 Seca4g01801 4 29658690 29660762 ECH
Seca10g05023 10 115671969 115673984 Seca4g01801 4 29658690 29660762 ECH
Seca4g01801 4 29658690 29660762 Seca10g05023 10 115671969 115673984 ECH