Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01795 ATGCCTTTGGAAAGAATGGACCAGAGGGGTGTTGCTGCCTCATCCCACTTTTTTGATGACATTTCTTATGCTTCTGAGAGGAATGTTGGATTGCGGAAGCCAAAATCTATTCATGATCATTATCCAGAAGGTGAGGTCAATCAGCTCATTATTTGTTCAAGAAAGTCCAGAAAGAGTGAAATGGTGGCATCACCTGGCAGCATTTTGAATGCTTCATCACCCCTTGGAACAAGTGCAAAAACAGGCTTGCCAATGTCGCAGACTAGTCTATCTGGGGAAATTTCAGGAAACCTACACTTTGGTGGAGAAGCAGGCATTATAGGCATGCTGAAGGATTCTAAGGAATCATTGAATTATCATCCGAGATCATGGTCTGATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTTTAATTGGGAACAGGATTGTCACCAATGCAGGCTCACGTGAAAGTAGTCTATTCTCAAGTTCACTGTCTGATATATTTAGCCAAAAGTTGCGGTTATTGGGGAATGATGTTCTGTCTGATCAGCCCATTACTGTTGGTCCCTTTCCTGAGGAAGAACCATATAAATCTCCTGAAGAAATTGAGGCTGACACTATTGGAAGTCTCCTTCCTCATGAAGATGATCTGTTTTCTGGTGTCACTGATGAGTTAGGGAGCAGTGCTCATGCTAGAACGAGTGATGATTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGATGAACATTTAGTTTCAGGAAAAAGAACCAGTTGCATGGATGGGGATCCTGGTTACTTTGGGGGTTCTAAAGGAAAATTTCCTGTAAATGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAGTGTAGAAGATTCTGAGCTAAAGACTCTCTTTGAGCAATATGGAGAGATCCGAACCATTTATACTGCCTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGACCTAAAGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAAATCTAGGAAACTTGATATACATTATTCAATTCCAAAGGGAAATGCTCCAGAGAAGGATATTGGCCATGGTACCCTGATGATATCTGGTCTTGATTCATCTGTTTTGAATGATGAACTTAAACATATTTTTGGGTTTTATGGAGAAATTAAAGAAATTTATGAATATCCAGAAATGAATAATATCAAATACATTGAGTTTTATGATGTCCGAAGTGCAGAATCTTCTCTACGTGCATTGAATGGGATCTGCATTGCTGGGAAACACATCAAACTTGAACCTGGCCATCCTAGGATTGCAACATGTATGATGCAGCAGTCTCAAAAAGGACAAGATGAACCCGATCTTGGTCATAATCTCAATGACAACTTATTATTAAGACAGAAGGGAGTGTCTTCTGGAGTTATTGCATCTGGTGGCTGCTTGGAAAATGGATACAGTCAAAGATTTCAATCTGCATCACGGCTACCTTTGAATGCTTTCATTGATAACGCATTCTTTAATGTGAATTCTAGCATACACAAGACTGCAAGAGGGGCATCTGTTGGAAAAGTATCTGGTGTTAGTGAGTCCATTAACGTTGTTGATGCAATGCAATTTGCATCTGTTCCCAGATTCCACCCTCATTCTTTACCGGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTACAACTTTTCAAGCACCATTAACATGGCTGCAAATATTGGAACTGGATCAACAGAAGTGTCTGACAGCAGGCACATTCAGGGAATGGGCTCAACTGGGAACCTGGCGGAATTTAACGGAGGAGGAAATGGGAGCCACCCCCGTCAACTTTATCATATGTGGAACGGCTCCAACTTGCATCAGCAACCTCCATCAAATGGCATGCTTTGGCAGAAAACACCATCCTTTGTTAATGGTGCTTGTGCCCCATGTCCTCCACAGATTCCCAGCTTTCCCAGGACACCGCCTCATGTGCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCGCCAGTTGTTACAGCCTCACCCTGGGAAAGACAGCATTCTTACTTGGGAGAGTCTCCTGATGCTTCTGGTTTTAGATTGGGCTCTCTAGGAAGTGCTGGTTTTCATGGTAGCTGGCAGTTGCAACCTCCAGATTTTTCTGGCAACATGTTTTCCCATGTTGGTGGGAATGGTACTGAATTGACATCCAATGCCGGGCAGGGCTCTCCTAAGCAGTTGTCTCATGTTTTCCCGGGGAGACTTCCCATGACTTCAATGTCAAAGTTTGATTCTACCAATGAACGAATGAGAAACCTCTACCATCGTAGAAGTGAAGCAAACAACAACAATGCTGATAAAAAACAATATGAACTTGACCTAGGCCGCATATTGCGTGGGGAAGACAACCGAACAACGCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGGCAAGTATTTATTTGAAGTTGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATAATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTTGCTGTACTTGCATATGCCCGGATTCAAGGAAAAGCTGCTCTTATTGCTCATTTTCAAAATTCGAGCCTGATGAATGAAGATAAACGTTGCCGTCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGTACCAATATTAGACCGAGGCCTGGAAAATCTCGCATTAATGGTAATGAGGAGAATCGCAACCAAGGGAATCCTTCTACTTTGGCAACTGGAGAGGAATCTGCTAATGGAATAGACCCTTCAATGAGTTCTTCAAGGGATGCTGACTGA 2973 0.4181 MPLERMDQRGVAASSHFFDDISYASERNVGLRKPKSIHDHYPEGEVNQLIICSRKSRKSEMVASPGSILNASSPLGTSAKTGLPMSQTSLSGEISGNLHFGGEAGIIGMLKDSKESLNYHPRSWSDVHRQPASSSYGLIGNRIVTNAGSRESSLFSSSLSDIFSQKLRLLGNDVLSDQPITVGPFPEEEPYKSPEEIEADTIGSLLPHEDDLFSGVTDELGSSAHARTSDDFEDFDLFSSGGGMELEGDEHLVSGKRTSCMDGDPGYFGGSKGKFPVNEQSSRTLFVRNINSSVEDSELKTLFEQYGEIRTIYTACKHRGFVMISYYDLKAAQNAMKALQNRSLKSRKLDIHYSIPKGNAPEKDIGHGTLMISGLDSSVLNDELKHIFGFYGEIKEIYEYPEMNNIKYIEFYDVRSAESSLRALNGICIAGKHIKLEPGHPRIATCMMQQSQKGQDEPDLGHNLNDNLLLRQKGVSSGVIASGGCLENGYSQRFQSASRLPLNAFIDNAFFNVNSSIHKTARGASVGKVSGVSESINVVDAMQFASVPRFHPHSLPEYRDSLANGSPYNFSSTINMAANIGTGSTEVSDSRHIQGMGSTGNLAEFNGGGNGSHPRQLYHMWNGSNLHQQPPSNGMLWQKTPSFVNGACAPCPPQIPSFPRTPPHVLRASHIDHHVGSAPVVTASPWERQHSYLGESPDASGFRLGSLGSAGFHGSWQLQPPDFSGNMFSHVGGNGTELTSNAGQGSPKQLSHVFPGRLPMTSMSKFDSTNERMRNLYHRRSEANNNNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKASIYLKLNKCNVGYAFINMIDPGQIIPFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGTNIRPRPGKSRINGNEENRNQGNPSTLATGEESANGIDPSMSSSRDAD. 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01795 990 MobiDBLite consensus disorder prediction 925 990 - -
Seca4g01795 990 CDD RRM3_MEI2_like 810 902 IPR034454 -
Seca4g01795 990 SUPERFAMILY RNA-binding domain, RBD 280 439 IPR035979 GO:0003676
Seca4g01795 990 CDD RRM1_MEI2_like 282 357 IPR034453 -
Seca4g01795 990 Gene3D - 366 460 IPR012677 -
Seca4g01795 990 SMART rrm1_1 284 352 IPR000504 GO:0003723
Seca4g01795 990 SMART rrm1_1 369 437 IPR000504 GO:0003723
Seca4g01795 990 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 356 IPR000504 GO:0003723
Seca4g01795 990 SUPERFAMILY RNA-binding domain, RBD 809 901 IPR035979 GO:0003676
Seca4g01795 990 FunFam Protein MEI2-like 1 367 461 - -
Seca4g01795 990 PANTHER RNA RECOGNITION MOTIF-CONTAINING 56 979 - -
Seca4g01795 990 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 349 IPR000504 GO:0003723
Seca4g01795 990 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 435 IPR000504 GO:0003723
Seca4g01795 990 MobiDBLite consensus disorder prediction 956 990 - -
Seca4g01795 990 Gene3D - 274 365 IPR012677 -
Seca4g01795 990 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 368 441 IPR000504 GO:0003723
Seca4g01795 990 Pfam RNA recognition motif 2 807 910 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01795 Seca-Chr4 29622749 29630770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01795 280 434 Eukaryotic Initiation Factors Gene Family AT3G16380 25.568 1.23e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01795 - - aprc:113865455 1582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01795 4 29622749 29630770 Seca4g01795 4 29622749 29630770 ECH
Seca12g06385 12 155841037 155849872 Seca4g01795 4 29622749 29630770 PCT