Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01789 ATGTTTTTTGATAATGTATTTCACAAAACTCAATGGCCCGCCAATGTTCCGACAACAGGCTCTGTTCTGTTTATGATCTCTTTCCTCTCCAGTACATGGAAGAAAGTTCAGAAGCCTTACTCTCGAGATGTTGGAAGTTCTACAAAGGATGTGGAAAGCACACGTGGGTTTAATTTCCATGCCATTTGTTTTATTCAATTTTGCACTTTGGAAGGGCTTGGAGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTTGAAAATTTTGGAGGAGGGCATAATGATCCTCTATTTGTAACTTTGGGAGGAATCAGTACATTCAAGGAACTTCTTCGGTCACAGGTGGAGCACATGCTGAATGACCGGTTACTGAACATTCTAAATGTCGAAATCCTTGATGTCAAGAATGTTAAGCCATCATACTTGATGATATGGCCTATAGCTCCAGTAGTTTCTGTAGAGGAAGCTTGGAGGCGTTTTGAGAAAGCTTCCCTTGTATATGATCAGGCACGTGAGAGGTTTATGTCATTGAGAAAAAGCACTAAGACTGCTGTTGTCACTGTCATGGAAGAGAGAAATTCCAATATGCTTGCTGCATCAGATAGTCCTCTGGCACTGCATACAGGGACTGCACTAATTGGGTTGAGTTCTGGTTTCATATTTGCTGCTGCTGTGTCTGTTACATCTGAGCTGTTTGGACCTAACAGTGTGGGTGTCAATGAGTGGTGGGAAGAGACTGACAAGGACACTACATTTGATGCATATGTGGTTGGTTCAAGGAAGGATATCCGTAGAAGCCAACTTGCTGCAGTTGTGAGAAGCCAAATCATCATAAAATTTCTAGCACAAGTTTCACTTGGAGCTGTAGAAATTGCTCTTGTTTTTGGCATGGCATCTGCTCAAGCTCTCTGTACAGCAAAAGTCAAAATTGCCCATCCTATATTTTACTTTCGTTATTTGGTAGGTGACCAAGAGGGTAATTCATGTTCATTCCGAGTTCATATTGGAGAAGCCGGGGAGGAAGAGGGAGACGGCACTATGGCATTACAAGTAGGCCTAAACACTTCCAAGGTTATCATCCTTATTGGAGCTGGTTTGACTGGCTCTGTTGTTTTGAGTAGTGGGCAGCTATCTGCTGTCATTGCAGAGCTTCAAAAATTGTTGAAAGTTGTTGATGAGGTTGGTAGTATGGGTGTAGAAGGATACTGTGTGAATATTCCATGGAGTCGAGAAGGAGTTGGTGATAATGATTACAGTTTTGCATTTCAGCATGTTGTCCTTCCTATAGCTCCTGAGTTTGCTCCAGATTTTACCATAATATCATTTGATGCTGCAAGAGGTGATCCCCTATGTGTGATTGTTGCTTGGATTCTTGGTTTCAAGCTGCAATTCCTCATAACAGAAAATGATTGTAATTGA 1422 0.4191 MFFDNVFHKTQWPANVPTTGSVLFMISFLSSTWKKVQKPYSRDVGSSTKDVESTRGFNFHAICFIQFCTLEGLGEAYDGDIAFASALENFGGGHNDPLFVTLGGISTFKELLRSQVEHMLNDRLLNILNVEILDVKNVKPSYLMIWPIAPVVSVEEAWRRFEKASLVYDQARERFMSLRKSTKTAVVTVMEERNSNMLAASDSPLALHTGTALIGLSSGFIFAAAVSVTSELFGPNSVGVNEWWEETDKDTTFDAYVVGSRKDIRRSQLAAVVRSQIIIKFLAQVSLGAVEIALVFGMASAQALCTAKVKIAHPIFYFRYLVGDQEGNSCSFRVHIGEAGEEEGDGTMALQVGLNTSKVIILIGAGLTGSVVLSSGQLSAVIAELQKLLKVVDEVGSMGVEGYCVNIPWSREGVGDNDYSFAFQHVVLPIAPEFAPDFTIISFDAARGDPLCVIVAWILGFKLQFLITENDCN. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01789 473 Gene3D Histone deacetylase domain 389 464 IPR037138 -
Seca4g01789 473 Gene3D Arfaptin homology (AH) domain/BAR domain 68 202 IPR027267 -
Seca4g01789 473 SUPERFAMILY Arginase/deacetylase 391 452 IPR023696 -
Seca4g01789 473 PANTHER CENTAURIN/ARF 66 192 IPR045258 GO:0005096
Seca4g01789 473 SUPERFAMILY BAR/IMD domain-like 70 182 IPR027267 -
Seca4g01789 473 Pfam Histone deacetylase domain 392 451 IPR023801 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01789 Seca-Chr4 29477431 29482546 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01789 197 242 Nodulin-like Gene Family AT1G31470 76.596 5.60e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01789 K12489 - gmx:100797073 161.77