Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01785 ATGGAGAGTGCTGTGTGTCTATGGGTTTTACTCTTGGTGGGGTGTTTTCTTCTCCTTTTCTCGGAAGCAAAATACATAAGGTACAATACTACATCAAGCATTGTTCCTGGGAAGCTCAATGTTCACTTGGTACCTCACACTCATGATGATGTTGGATGGTTGAAAACCGTGGACCAGTACTATGTTGGTTCCAACAACTCCATTCAGGGAGCATGTGTTCAAAATGTGCTAGATTCTCTAGTACCTGCTTTGTTGGCAGACAAGAATCGCAAGTTCATTTATGTTGAACAGGCATTTTTCCAGCGTTGGTGGAGAGATCAGAGTGAGGCCGCCCAGGACACAGTCAAGAAGCTGGTCAAATCTGGTCAATTGGAGTTCATAAACGGTGGTATGTGTATGCATGACGAGGCTGCTACACATTACATTGACATGATTGATCAGACAACCCTTGGACATCGATTTATCAAAGAAGAATTTGGTATAACTCCAAGAATAGGATGGCAAATTGATCCATTTGGACATTCTGCAGTGCAGGCTTACTTATTGGGAGCAGAGATTGGATTTGACTCTCTATTCTTTGCACGGATTGACTACCAAGATAGAGCTAAGAGAAAAGATGAAAAAAGTCTTGAAGTTGTGTGGCAGGGCTCCAAGAGCCTTGGTTCATCTGCACAGATATTTTCTGGTGCATTCCCTGAGAATTATGAACCTCCCAGTAATTTCTACTATGAGGTAAATGACGATTCAGTCGATTCTCCGATTGTTCAGGATGATATCAATTTGTTTGATTACAATGTCCCTGAACGAGTAAATGAGTTTGTCTCAGCTGCAATAACACAGGCCAATATAACGCGCACAAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCACATACCTGGTTTCAGCAAATGGACAAGTTTATTCACTACGTTAACCAAGATGGCCGGGTTCATGCCTTGTACTCGACTCCATCAATATATACTGATGCAAAACATGCTGCAAATGAGGCTTGGCCAATCAAGACTGATGACTTCTTTCCGTATGCTGATCGTGTAAATGCCTATTGGACGGGATATTTTACAAGTAGGCCAGCTCTTAAAGGTTATGTCAGATTGATGAGTGGCTACTACTTGGCTGCAAGGCAGTTAGAATATTTTAAAGGGAAGAGTTCCGTAGGTCCTAATACTGACTCTTTGGCTGATGCTTTGGCTATTGCTCAACACCATGATGCGGTATCTGGTACAGAAAAGCAGCATGTGGCTAATGATTATGCAAAACGGCTTTCAATAGGTTACACAGAGGCTGAGAAAGTTGTGGCAGCATCACTTGATAGCTTAACAAAGGCTGCAACCAAAACCGGTTATAGGGGTCCACAAATTAAATTTCAACAGTGTCCACTTCTGAATGTAACTTACTGTCCTGCATCAGAAATTAACTTCTCAAATGGGAAAGAACTGGTTGTTGTCGTTTACAATTCTCTGGGATGGAAAAGAGAGGATGTTATAAGGATTCCTGTTGTCAATGAAAATGTTGTTGTTCGGGACTCCAGTGGAAAAGAAATCCAATCCCAGCTGCTGCCAATACTTGATGCTTTTCTTGGTTTAAGAAACTACCACACTGCAGCATACCTAGGAGTGTCTTCAACTGTAAACCCTAAATATTGGCTTGCTTTTTCAGCTACTGTTCCCCCACTTGGTTTTAGTACATACTATGTATCCTATGCCAAACAAAGAGCTACATTTTCAGATAGACATGATACAACATACAAGTCAGGGAATCAGAGTGATACATTTGAAGTGGGCCCAGGAAATTTGAAACTAATTTATTTTGGGAAGGATGGGAAACTTACTCAATATATCAACAGTAGAAGCAAGGTCAAACAATCTCTAGAGCAGACCTACAAATTTTATGCTGGGTATGGAAATGATAGAACACAAAATGCTCAGGCGTCTGGAGCATATATTTTTCGCCCCAATGGTTCATCATCTCCTATCGAATACGATTTTCAGTCTCCTCCCACAATTTTGCGGGGACCAATTGTGCATGAAGTGCATCAAAAGATCAATTCATGGATATACCAGACCACCAGACTGTACAAGGGGAAAGAACATGCTGAAGTTGAGTTTATTGTTGGACCCATACCCATTGATGATGGAGTTGGCAAAGAAATTGCAACTGAGATTAAGACAAATCTGGCAAGCAGCAAAACCTTCTATACTGATTCTAATGGACGTGATTTCATTGAACGGGTTCGGGACTATAGAAAAGACTGGGACTTGGAAGTAAATCAACCTGTTGCTGGAAATTATTACCCTATCAACCTTGGGATTTACTTGAAAGATAAAAGCAAAGAGTTTTCTATATTGGTAGATAGGTCTATTGGGGGTTCCAGCATCCTAGATGGGCAAGTGGAGCTAATGGTTCATAGGAGGTTACTTGAGGATGATTCCAGAGGAGTTGCTGAGGCACTGAATGAAACAGTTTGTGTCCATGATAAGTGCACTGGATTAACTGTGCTAGGGAAGTATTATTTCAGAATTGATCCTGTAGGAGAGGGTGCTAAATGGCGTCGATCATTTGGTCAGGAGATATACTCACCGTTTCTTTTAGCCTTCACAAAGAGTGAAGGTAACTGGGGAGATTCTCATGTCACAACGTTCTCAGGAATAGATTCCTCATACAACTTACCAGATAATGTTGCAATAATAACCCTCCAGGATCTGGGTGATGGAACAGTTCTGCTTCGGCTGGCACACTTATATGAGATTGGCGAGGACATGCATCTTTCAGTTAAGGCAAATGTAGAACTTAAAAAGGTGTTCCCCCGTAAACAGATAAACAAAATATCTGAGGTGAGCTTATCAGCTAACCAAGAAAGAGCAGAAATGGAGAGGAAGAGATTAGTGTGGAAAGTTAAAGGGTCACATGGAGAACCACAGGTGTCAAGGGGAGGACCGGTTGATCCAAAAAAGCTAGTTTACATGGAAGAAAGTTCAGAAGCCTTACGCTCGAGATGTTGGAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGGGCTTGGAGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTTGAAAATTTTGGAGGAGGGCATAATGATCCTCTATTTGTAACTTTGGGAGGACCTGTGATGACCAAATTCTCTATTGCTTTGAGAGAAATCAGTACATTCAAGGAACTTCTTCGGTCACAGGTGGAGCACATGCTGAATGACCGGTTACTGAACATTCTAAATGTCGAAATCCTTGATGTCAAGGAAGCTCGGAGGCGTTTTGAGAAAGCTTCCCTTGTATATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAGAGCACTAAGACTGATGTTGTAACTGTCATAGAAGAGGAATTGAACAATGCAAGGACCTCATTTGATGAAGCTCGTTTCAATCTGGTTAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCATCTATTACATGAGATGGAGCCTTTCATTATTGAGATTTTGGCTTATGCACAAAAGGCAAGAGAAAGTTACAATGAGGAGCAGATTTCTCTTTGTGAAAGAATGGTAGAGTACAAAAAAATAGCTCATCAAGAAAGTAGGTTGTCCTTGAGTGGCCCTTACTGTTCTCCCATTAGAGAAGGTGTGCAGCCACAACCTTTTTCCAGGATATCAAATAAAGTAGTAGATGCAGTAACAGAATCTGCTGCAAATGGAAAGGTTCGAATCATTCGACAAGGGTATCTTTCCAAACGTTCCTCCAATTTGAGGGCTGACTGGAAGAGAAGGTATTTCGTTCTTGATAGTCGTGGAATGCTTTACTACTATCGTAAACCATGGAATGGTTTACCTGTAAGTATCTTAGTCCAACTAAATAATTATGCCAATGATAATAGTGCTGGAATTCTGAGTCGATTGCTTTCTTCACATTACCATGGAGTTGTCCATGATGACAAATCTGTGGCACGTCATACAGTGAACCTTCTCACATCAACAATCAAGATGGATGCTGAACAGTCAGATTTAAGGTTCTGCTTTAGGATTATTTCACCATCAAAGAGTTACACATTGCAGGCAGAAAATGCCCTGGACCAGATGGATTGGATCGAAAAGATAACTGGTGTAATTACTTCCTTGTTGACTGTACAGCCACTGGAAAAGTCTTTCTCAGCTGACTCAGAAAGTTGTGACTGGGACTCTGCTAGCAAAACTGATGATTCGGTACAAAGTTCTCCTGATCATGATCTAGCAATGACTGGAGATTTTGCAGCCAAGAACTTAATCAATTATAGATCACCTGAAGACTTGCAGAAGAATAAGCTGCATATAAAAGTTGAAAAACCAATTGATGTTCTTAGAAAAGTTAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCTGGTGTTCACCGTAATCTTGGTGTGCATGTATCAAAAGTGAGATCACTTACACTTGATGTGAAAATATGGGATTCCTCAGTCTTAACCATGTTTCAGTCATTAGGCAATCTCTTTGCAAACTCGGTTTGGGAGGAGCTGTTGCATTCGACAAGTAGTTCGCATACAGATGACACTCCTGATGGTTCATCCAAGGCAAACAAAGGCAAGCTATTTCATGCAAGAAAACCAGAACATGATGATCCTATTTCATTAAAGGAGAGGTTCATTCATGCAAAGTATGCTGAGAAAGTGTTTGTTCGCCGGGTGAAAAAAAACCACCGTCTCCTTTCAGTGGCACAACAGGTTTGGGAAAGCATCTGCGCCAATGACAAGAAAGCAGTGTACAGGCACATTGTCAAATCAGATGTGGATGTCAATACTATTAGTGGGGAAGCATTATCCTATTCTTCCAACAAGCCTTCTTCTTCAAGTAATTCAGACATATCTAAAAGTAAAATTCAACTAATGGAGGACATACAAGAAGGTTCTAGTGTGCTTCACCTGGCATGCCTAAGTTGTGATGCTGGAATGGTAGAGCTGCTCATACAGTATGGAGCAGATGTAAATGCTCTTGATTTAATAGGTCGGACACCATTGCATTACTGCATTATGAGAGGGAAGAATGCAGCTGTAAAAGTGCTTATTGCAAGGGGAGCCAATCCAGTTGCTGCTGATAAAGAAGGCAATACTCCTCTTAACCTTGCCCCAGAACCTGGCAATGTTGGCAAAGATATTCTTGCTCTCTTATCAAGCAGCAGATGA 5355 0.4125 MESAVCLWVLLLVGCFLLLFSEAKYIRYNTTSSIVPGKLNVHLVPHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSLVPALLADKNRKFIYVEQAFFQRWWRDQSEAAQDTVKKLVKSGQLEFINGGMCMHDEAATHYIDMIDQTTLGHRFIKEEFGITPRIGWQIDPFGHSAVQAYLLGAEIGFDSLFFARIDYQDRAKRKDEKSLEVVWQGSKSLGSSAQIFSGAFPENYEPPSNFYYEVNDDSVDSPIVQDDINLFDYNVPERVNEFVSAAITQANITRTNHIMWTMGTDFKYQYAHTWFQQMDKFIHYVNQDGRVHALYSTPSIYTDAKHAANEAWPIKTDDFFPYADRVNAYWTGYFTSRPALKGYVRLMSGYYLAARQLEYFKGKSSVGPNTDSLADALAIAQHHDAVSGTEKQHVANDYAKRLSIGYTEAEKVVAASLDSLTKAATKTGYRGPQIKFQQCPLLNVTYCPASEINFSNGKELVVVVYNSLGWKREDVIRIPVVNENVVVRDSSGKEIQSQLLPILDAFLGLRNYHTAAYLGVSSTVNPKYWLAFSATVPPLGFSTYYVSYAKQRATFSDRHDTTYKSGNQSDTFEVGPGNLKLIYFGKDGKLTQYINSRSKVKQSLEQTYKFYAGYGNDRTQNAQASGAYIFRPNGSSSPIEYDFQSPPTILRGPIVHEVHQKINSWIYQTTRLYKGKEHAEVEFIVGPIPIDDGVGKEIATEIKTNLASSKTFYTDSNGRDFIERVRDYRKDWDLEVNQPVAGNYYPINLGIYLKDKSKEFSILVDRSIGGSSILDGQVELMVHRRLLEDDSRGVAEALNETVCVHDKCTGLTVLGKYYFRIDPVGEGAKWRRSFGQEIYSPFLLAFTKSEGNWGDSHVTTFSGIDSSYNLPDNVAIITLQDLGDGTVLLRLAHLYEIGEDMHLSVKANVELKKVFPRKQINKISEVSLSANQERAEMERKRLVWKVKGSHGEPQVSRGGPVDPKKLVYMEESSEALRSRCWKFYKGCRKYTEGLGEAYDGDIAFASALENFGGGHNDPLFVTLGGPVMTKFSIALREISTFKELLRSQVEHMLNDRLLNILNVEILDVKEARRRFEKASLVYDQAREKFMSLRKSTKTDVVTVIEEELNNARTSFDEARFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYFQQGYHLLHEMEPFIIEILAYAQKARESYNEEQISLCERMVEYKKIAHQESRLSLSGPYCSPIREGVQPQPFSRISNKVVDAVTESAANGKVRIIRQGYLSKRSSNLRADWKRRYFVLDSRGMLYYYRKPWNGLPVSILVQLNNYANDNSAGILSRLLSSHYHGVVHDDKSVARHTVNLLTSTIKMDAEQSDLRFCFRIISPSKSYTLQAENALDQMDWIEKITGVITSLLTVQPLEKSFSADSESCDWDSASKTDDSVQSSPDHDLAMTGDFAAKNLINYRSPEDLQKNKLHIKVEKPIDVLRKVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHVSKVRSLTLDVKIWDSSVLTMFQSLGNLFANSVWEELLHSTSSSHTDDTPDGSSKANKGKLFHARKPEHDDPISLKERFIHAKYAEKVFVRRVKKNHRLLSVAQQVWESICANDKKAVYRHIVKSDVDVNTISGEALSYSSNKPSSSSNSDISKSKIQLMEDIQEGSSVLHLACLSCDAGMVELLIQYGADVNALDLIGRTPLHYCIMRGKNAAVKVLIARGANPVAADKEGNTPLNLAPEPGNVGKDILALLSSSR. 1785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01785 1784 Gene3D - 479 603 IPR013780 -
Seca4g01785 1784 Pfam Glycosyl hydrolases family 38 N-terminal domain 40 354 IPR000602 GO:0004559|GO:0006013
Seca4g01785 1784 Coils Coil 1099 1119 - -
Seca4g01785 1784 CDD PH_ACAP 1278 1414 - -
Seca4g01785 1784 ProSiteProfiles Ankyrin repeat profile. 1725 1757 IPR002110 GO:0005515
Seca4g01785 1784 FunFam Alpha-mannosidase 604 871 - -
Seca4g01785 1784 Pfam Glycosyl hydrolases family 38 C-terminal domain 608 823 IPR011682 GO:0004559|GO:0006013
Seca4g01785 1784 CDD ArfGap 1482 1611 - -
Seca4g01785 1784 Pfam Alpha mannosidase middle domain 359 451 IPR015341 GO:0004559|GO:0006013
Seca4g01785 1784 SUPERFAMILY ArfGap/RecO-like zinc finger 1479 1619 IPR037278 -
Seca4g01785 1784 PANTHER ALPHA-MANNOSIDASE 17 989 - -
Seca4g01785 1784 Pfam BAR domain of APPL family 997 1214 IPR004148 GO:0005515|GO:0005737
Seca4g01785 1784 MobiDBLite consensus disorder prediction 1425 1448 - -
Seca4g01785 1784 Pfam Ankyrin repeats (3 copies) 1697 1770 IPR002110 GO:0005515
Seca4g01785 1784 ProSiteProfiles Ankyrin repeat profile. 1692 1724 IPR002110 GO:0005515
Seca4g01785 1784 ProSiteProfiles PH domain profile. 1275 1410 IPR001849 -
Seca4g01785 1784 FunFam Alpha-mannosidase 321 400 - -
Seca4g01785 1784 Gene3D Arfaptin homology (AH) domain/BAR domain 990 1231 IPR027267 -
Seca4g01785 1784 PRINTS HIV Rev interacting protein signature 1491 1510 IPR001164 GO:0005096
Seca4g01785 1784 PRINTS HIV Rev interacting protein signature 1533 1554 IPR001164 GO:0005096
Seca4g01785 1784 PRINTS HIV Rev interacting protein signature 1510 1527 IPR001164 GO:0005096
Seca4g01785 1784 FunFam Alpha-mannosidase 39 322 - -
Seca4g01785 1784 SMART PH_update 1276 1412 IPR001849 -
Seca4g01785 1784 FunFam Alpha-mannosidase 479 604 - -
Seca4g01785 1784 ProSiteProfiles Ankyrin repeat region circular profile. 1692 1723 - -
Seca4g01785 1784 ProSiteProfiles Ankyrin repeat region circular profile. 1725 1757 - -
Seca4g01785 1784 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1479 1624 IPR001164 GO:0005096
Seca4g01785 1784 FunFam Alpha-mannosidase 401 457 - -
Seca4g01785 1784 SMART 5bar 976 1199 IPR004148 GO:0005515|GO:0005737
Seca4g01785 1784 Pfam PH domain 1277 1409 IPR001849 -
Seca4g01785 1784 Gene3D Arf GTPase activating protein 1461 1621 IPR038508 -
Seca4g01785 1784 SUPERFAMILY Ankyrin repeat 1640 1772 IPR036770 -
Seca4g01785 1784 Gene3D - 1622 1781 IPR036770 -
Seca4g01785 1784 Gene3D Glycoside hydrolase 38, N terminal domain 39 322 IPR027291 -
Seca4g01785 1784 Gene3D - 604 871 - -
Seca4g01785 1784 Pfam Putative GTPase activating protein for Arf 1482 1618 IPR001164 GO:0005096
Seca4g01785 1784 MobiDBLite consensus disorder prediction 1425 1447 - -
Seca4g01785 1784 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 1462 1625 - -
Seca4g01785 1784 Gene3D Glycoside hydrolase family 38, central domain 402 457 IPR037094 GO:0004559|GO:0006013
Seca4g01785 1784 SUPERFAMILY Galactose mutarotase-like 465 975 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca4g01785 1784 CDD BAR_SFC_plant 995 1196 IPR035670 -
Seca4g01785 1784 SUPERFAMILY Glycoside hydrolase/deacetylase 28 355 IPR011330 GO:0005975
Seca4g01785 1784 CDD GH38N_AMII_LAM_like 39 318 - -
Seca4g01785 1784 Gene3D Glycoside hydrolase family 38, central domain 323 401 IPR037094 GO:0004559|GO:0006013
Seca4g01785 1784 Gene3D - 1268 1422 IPR011993 -
Seca4g01785 1784 SUPERFAMILY PH domain-like 1184 1409 - -
Seca4g01785 1784 SMART arf_gap_3 1479 1624 IPR001164 GO:0005096
Seca4g01785 1784 SUPERFAMILY Families 57/38 glycoside transferase middle domain 358 452 IPR028995 -
Seca4g01785 1784 SMART ANK_2a 1725 1754 IPR002110 GO:0005515
Seca4g01785 1784 SMART ANK_2a 1692 1721 IPR002110 GO:0005515
Seca4g01785 1784 MobiDBLite consensus disorder prediction 1568 1594 - -
Seca4g01785 1784 SMART Alpha_mann_mid_2 359 433 IPR015341 GO:0004559|GO:0006013
Seca4g01785 1784 SUPERFAMILY BAR/IMD domain-like 991 1298 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01785 Seca-Chr4 29434934 29461928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01785 8 927 Glycoside Hydrolase AT5G13980 68.649 0.0 1344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01785 K01191 - gmx:100798150 1761.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01785 4 29434934 29461928 Seca4g01785 4 29434934 29461928 ECH
Seca12g06390 12 155897399 155910526 Seca4g01785 4 29434934 29461928 PCT