Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01782 ATGGCATCATCAGAGGTGACGATGAAGGGGAATTGTTTGAATCACAACGATGGTAGTAGGAACGCTACAACCGAGGGTCATTCACCCTCCACGGCGAGAGTGTTTTTTTTTTTTTTTTTGGTAGAAGACGCGGAAGCTGCGCTTTACAGGGAGCTATGGCATGCCTGTGCTGGTCCCCTTGTAACTGTGCCCAGGGAAGGAGAACGGGTCTTTTATTTCCCTCAGGGACATATTGAACAGGTGGAGGCGTCGACGAATCAGGTGGCGGACCAGCATATGCCAGTGTACGATCTCCCACCCAAGATCCTTTGTCGAGTCATCAACGTGCAGTTGAAGGTAGCGGAGCCGGACACGGATGAGGTGTTTGCCCAGGTCACCTTACTTCCAGAGGCAAATCAAGATGAGAATGCCGTGGAGAAAGAGCCTCCGCCTCCTCCGCCGCCGCGATTTCATGTTCATTCTTTCTGTAAAACTCTGACGGCCTCTGATACCAGTACCCATGGTGGGTTTTCCGTACTGAGACGGCATGCTGATGAATGCCTTCCTCCACTGGACATGTCAAAGCAGCCACCAACCCAGGAATTGGTGGCGAAGGATTTGCACACGAATGAGTGGCGGTTTAGACATATCTTCCGGGGTCAACCCCGGAGACACTTACTTCAGAGTGGTTGGAGTGTTTTTGTAAGCTCCAAAAGGCTTGTTGCCGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAACTTCGTGTTGGTGTCAGGCGAGCAATGAGGCAGCAGGGTAATGTTCCATCCTCAGTTATTTCTAGCCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACCAAGACCATATTCACTGTTTATTACAAGCCTAGGACCAGTCCTGCGGAATTTATTGTTCCGTATGATCAATATATGGAGTCTCTCAAAAATAATTATACCATAGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCGGAGCAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATGTTGATTCCAAAAGGTGGAGAGAATCCAAATGGAGATGCCTCAAGGTAAGATGGGATGAAACATCTAACACACCTCGCCCTGAGCGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTGAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGCTGTTCCATCATCCCCAGGTTCTTCTGTTCTTACTCGAGAAGCATCTAAAGCAAGCGTAGACCCTCTACCAGCAAATGGATTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAAAGCAATGAGCCTGACACTGCTGAGAAGTCAGTCGTCTGGCCACCTGCAGTAGATGATGAGAAAATTGATGTTTCTACTTCAAGGAGGTATGGGTCAGAGAGCTGGATGTCAATGGGGAGGAATGAGCCTACTTATTCAGATCTTCTTTCAGGCTTTGGGGCCAGTGGAGATCCTTCTCATCCATCCTTGGTTGACCAAATGACCCATGTAGCTTATCCTGCTAGAAAGCATTCAGTGGATCATGAAGGCAAACTTCATGTTCCTCATCCGTGGCCTGTAATGCCTTCTAGTCTATCACTAAACCTCTTGGACAGTAATACCAAAGGTTCTGCACATGGTAGTGATACCGCATACCAAGCTCGAGGGAATTTGAGGTACACTGCGTTTGGTGAATACCCCATGCTTAATGGTCATAAAGTTGAGCATCTACATGGAAATTTGATGCCACCTCCACCCCCAACTCAATATCAGAGCCATTGTTCAAGAGAGCTAATGTCAAAACCAATGTCTTGTGAGTCTGTGAAACCAAAAGATGGTGACTGTAAGCTATTTGGCATCTCACTTATCAGTAGCTCTGTTGCACCAGAGCCTTCTGTATCTCAAAGAAATGTGACAAGCGACACAGCTGGTCCAATGCATATAACATCACACCAACAACGAATGTCAGAAAATGATCTGAAGTCAGATCACTCAAAGTGCTCAAAACAGACAGATGGTCAAGTTATCAATGATGACCATGATAAGGCATTGCATACTTCTCATCTGCATCTGAAAGATGTTCAATCCAAATCACACGGTGGTTCTGCTAGGAGTTGCACTAAGGTTCATAAGAAGGGGATTGCACTTGGTAGGTCGGTGGACCTTACTAAGTACAGTGACTATGATGAATTGGTTGCTGAATTGGATCAGCTGTTTGAATTTGGGGGTGAATTAATGTCAACAAAAAAGGATTGGCTTATTGTCTATACTGATAATGAGGGTGACATGATGCTTGTAGGCGATGATCCATGGCAGGAGTTCTGTGCCATGGTTCGGAAAATTTATATCTACCCTAAAGAGGAGATTCAGAAAATGAGCCCGGGTACATTGAGTTCGAAAAATGAAGAAAATCAGTCAGCTAGCGAAGGAGAAGTTAAAGGTGAACTGCATCAGAAGTTAAATTCAGACAATGGTCTTGATGCCTGA 2541 0.462 MASSEVTMKGNCLNHNDGSRNATTEGHSPSTARVFFFFFLVEDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKVAEPDTDEVFAQVTLLPEANQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHTNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTKTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDVDSKRWRESKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAVPSSPGSSVLTREASKASVDPLPANGFPRVLQGQEFSTLRGNFAESNEPDTAEKSVVWPPAVDDEKIDVSTSRRYGSESWMSMGRNEPTYSDLLSGFGASGDPSHPSLVDQMTHVAYPARKHSVDHEGKLHVPHPWPVMPSSLSLNLLDSNTKGSAHGSDTAYQARGNLRYTAFGEYPMLNGHKVEHLHGNLMPPPPPTQYQSHCSRELMSKPMSCESVKPKDGDCKLFGISLISSSVAPEPSVSQRNVTSDTAGPMHITSHQQRMSENDLKSDHSKCSKQTDGQVINDDHDKALHTSHLHLKDVQSKSHGGSARSCTKVHKKGIALGRSVDLTKYSDYDELVAELDQLFEFGGELMSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSASEGEVKGELHQKLNSDNGLDA. 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01782 846 MobiDBLite consensus disorder prediction 389 436 - -
Seca4g01782 846 FunFam Auxin response factor 153 257 - -
Seca4g01782 846 Gene3D - 718 811 - -
Seca4g01782 846 ProSiteProfiles PB1 domain profile. 722 804 IPR000270 GO:0005515
Seca4g01782 846 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Seca4g01782 846 MobiDBLite consensus disorder prediction 407 421 - -
Seca4g01782 846 FunFam Auxin response factor 318 390 - -
Seca4g01782 846 MobiDBLite consensus disorder prediction 1 27 - -
Seca4g01782 846 MobiDBLite consensus disorder prediction 649 671 - -
Seca4g01782 846 Gene3D - 152 257 IPR015300 -
Seca4g01782 846 SUPERFAMILY DNA-binding pseudobarrel domain 151 284 IPR015300 -
Seca4g01782 846 FunFam Auxin response factor 717 811 - -
Seca4g01782 846 Pfam Auxin response factor 281 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca4g01782 846 MobiDBLite consensus disorder prediction 672 692 - -
Seca4g01782 846 MobiDBLite consensus disorder prediction 810 846 - -
Seca4g01782 846 Gene3D - 318 388 - -
Seca4g01782 846 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 47 811 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca4g01782 846 CDD B3_DNA 153 255 IPR003340 GO:0003677
Seca4g01782 846 Pfam AUX/IAA family 712 809 IPR033389 -
Seca4g01782 846 MobiDBLite consensus disorder prediction 649 692 - -
Seca4g01782 846 MobiDBLite consensus disorder prediction 824 840 - -
Seca4g01782 846 SUPERFAMILY CAD & PB1 domains 724 799 - -
Seca4g01782 846 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Seca4g01782 846 SMART B3_2 155 257 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01782 Seca-Chr4 29276673 29281276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01782 1 828 B3 DNA Binding Superfamily AT5G62000 65.304 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca4g01782 AUX_IAA 9.1e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01782 - - gmx:100797082 1445.25