Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01781 ATGATGTCCAGAATAAACAACGCTTCTTGGATGGAAGAAAGAGAGGACGAAAACTCTGCTTCTGCTTCTTGGACCAGAAACTCCAAGCCAAACACTCCTGTTGCCTCTGCTTTTGTTGAAAACAGAGAAGACTTGGGTTCTCTCTGTGCTTTGAAACCCATGCTTGAAGTTGATGAGGAATGGTACATGAGGGACATGGCTTTCGATAACGTTTTGCTCCAAACAGTGGACTCTTCCTCTTCATGCTCTCCTTCTTCCTCTGTTTTCAACACCCTTGACCCTTCATCATCACAGGTGCAGTATTTTCTGCCTCCAAATCCAAAACCACCCACTTTATCTTCTCTTCTCAACCCTTTTGAAATGGGTTGCGAGGTGGGGTTTCTTGAGCCTCAAGCTTCCTCCACTGCTTCTCCCCTTCTGGGTACTGGCTTCGCTGACTTGAGCTCAAAACCACAGTTAGCACTTCCAAACCTTGGTTCGGGCACACAGTTGCCGACAACGAACGTGCCCCATTTGCCCCAAACTAACATTGGCTTTGTGGGGTTTCAGAATTTGGAGGAAGGTTCTGGAAAGCCTCTGTTTTTGAACAGGTCCAAGATTTTGAGACCCCTTGAATCATTGCCTCCATCTGGAGCACAACCCACTCTGTTTCAGAAAAGAGCTGCACTTAGAAAAAACATGGGATCCGAAGGTGGTGGTGTTGCAAGTAGGGGTAAGTGTGAAATTGGGGGAGGGAGTGATAAGAAAAGGAAGATGAGTAGTGGGGAGGAGATGGAAGATGCAAGTTTTGATGGGTCAGGGTTGAACTATGATTCTGATGACTTGACTGAGAGTAACAACAATAAGATGGAAGAGAATAATGGCAAGAATTGTGGAAACGCCTCCAATGGCAACAGCACAGTCACTGGTGTCGATCACAAAGGGAAGAAGAAGGGAATGCCAGCTAAGAATTTGATGGCTGAACGCCGTCGTAGGAAGAAGCTAAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCAAAGATTAGCAAAGTAAGAGTCTTTTTATTTTTTATTTTTTTCAGCCTAATTGCACTTTTATTCAATTTCTTAGAGTGTTCAGCTTCAGCCAGTTTGATTTTAATTTTGTTCTTTTTGGTTGATGTTTGTGTCATATTGGTTCATAATTAA 1170 0.4368 MMSRINNASWMEEREDENSASASWTRNSKPNTPVASAFVENREDLGSLCALKPMLEVDEEWYMRDMAFDNVLLQTVDSSSSCSPSSSVFNTLDPSSSQVQYFLPPNPKPPTLSSLLNPFEMGCEVGFLEPQASSTASPLLGTGFADLSSKPQLALPNLGSGTQLPTTNVPHLPQTNIGFVGFQNLEEGSGKPLFLNRSKILRPLESLPPSGAQPTLFQKRAALRKNMGSEGGGVASRGKCEIGGGSDKKRKMSSGEEMEDASFDGSGLNYDSDDLTESNNNKMEENNGKNCGNASNGNSTVTGVDHKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKVRVFLFFIFFSLIALLFNFLECSASASLILILFFLVDVCVILVHN. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01781 389 Pfam Helix-loop-helix DNA-binding domain 319 341 IPR011598 GO:0046983
Seca4g01781 389 MobiDBLite consensus disorder prediction 242 258 - -
Seca4g01781 389 MobiDBLite consensus disorder prediction 269 303 - -
Seca4g01781 389 Gene3D - 306 372 IPR036638 GO:0046983
Seca4g01781 389 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 198 345 - -
Seca4g01781 389 MobiDBLite consensus disorder prediction 1 28 - -
Seca4g01781 389 MobiDBLite consensus disorder prediction 227 312 - -
Seca4g01781 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 345 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01781 Seca-Chr4 29272831 29276262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01781 69 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 42.517 4.43e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g01781 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01781 - - cave:132174704 350.517