Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01778 ATGTGGGAGTGGGAATTGCAGGGTAAAGGCGAAGAAAAGCAATTGGAACTGGAAAACGAGGAGGCTAAGACCCCTTTGCCCCTCAGTGTTACTTCCCGGGCTTTGTACATGTTGGGAGACATCAAAGCAGGGCCTGCGTTTAAGTTCACGCAATGGCTCCAATTAGTTCGTAAACGCACTTCCAACTATCGCTCCTCTGGCTTCCCTCACCGTCCTTCGACCATGCCTTCTAGGTTTCTTACTACTTATTGGGAATCTACTAGGGATGCAAAAATTGAGCAGCTTCCAGAGCAAACAGAAATTAGTTTGTGGGAGAGACTTGGTAAAGCAGAAATGTTGGACATTGAATCGAGCTCCTTTTCTTGGGACAGGCTCTCTTCACTTCACCATACTGAGCACACTTGCAGCAATGAACATTCTGAGGATGAAATGAACAGGGCTCTTGAGGTAACAGTAAATTCTGGAGGGGTTGTCTTCTTTGCCTTTTTCAATGGCCTTGGGACTGATGATGTTTTTCCAAAAGAATCAGCAGCTGTTATAAAGATATCATCGTCAAGAATGGCAACACAATCTGAACGCCTTGGTTATGAATTTGCCAAGTGGTTGGGAGTTGAAACTCCACAGGCTAGAGTCATTCACAATACCAGTTCTGAATGGCTTCAAATAAAGAAAGCTACAGAAAAAGTGAGAGATGCAGCAAATTCTGCGGGTGATGAAATTGGTGAAATGACAAGTTTAGAACTTTTGGAAGCACTTGAGCTTAGCCGATGTCTCTTGTTTATGAGTTATGTACATGGTTTACCTTTGCTTGAAAGCTCTAGCGCATTTGAATCCCAGGACTCTGCAGAGAGAATATCAGCAGCCCTTGGCAGGATAATGATGCTTGATCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGTGAACTTAGATGGCGTGGGAACTCTGCAAATTTGTTATTGGCTGAGAAGATGATCTCTGCGAATACAGATACACTAGGAGAAGCTTTTGATTCTGCAATGAACCAATATGGACCAAGGGTGATCAGGGCCCTTAAGAAAGAAAGAAGGTCAGCTTCAGTAGATAGCAGATTGAATTCTCAAAATCTTGGAATGGAATCACAAGGTTCTTATCTTTCAGAGATCAGGGAATCATTAACATCCACTGACATGAGCCTTAAAAGTCAAACATCACGAAAATCTTTGTTTACTGACTTCAACATTGTGGCTATTGACTCTGGTGTTCCTCGCCGACCCCCTGCTGGAAAACGTGCGGATGATCAGGTCAATTATCCTAAGTTGGTTGAGTTACTACTAAATAGCTCTGAGTTTTCCTCTAACCTGTTACATGATATAACTGGAGGGAGATTAGGATGTCCCTCCCCAGAAGACATAAATACAACAACTGATGTACATGCAAGTGATGCAACATCAGTGGTTCATGAGTTCCGTAGTGGTTTCCGTGCTGCCCTTAGGGATCTGCAGGGATTCCATTTATTCCTACTTACACTTAGCCAAAAACTTGATAACTTGTTACGATCAATTATAAGCAAAATATCATTGGGGGAGTCTGAAAAAGAGGATTCAGTGGTTCCTGACTCACCTTCACCGATTGCTGCTGGTAGTTGTCCCTCACCAATAAGCCATCAAGATTTTAGTGATTCAGAATCACAGAGAACTGCTCCAAGGGCATCATCATCTTCTGGCAATAGAGATTGCTGCGACTCTGCTTCTTCTGTTTCAAGAGATTGTTCGCATGGAAAGTTCTCTAAAGGAAGTGGGGAGCCACTTCATGGTCTCCGCTTGACAGCTAAACTCCGTGACTTCCATAAATTTGCAAAGGTTGACACAGAATCTTATAAAGAATTGGAACAATGGAACGAAATGCTTAAAAATGATGTTATCAAGTTATGCCAAGAGAACAATTTCAATACCGGATTTTTTGAGGGCAGTGATAACAACACTGTTGTTGATACATATGAACTGAAGGTCAGACTGGAGCATATCCTTGAGAGGATTGTGTTGATATCTGAGGCTGCAAACACAGAGAAACCATCTGCTGTTACAAATAGTCTGTTCATTGGTGGAGCACTAGCTGCAAGATCTATATACACACTGCAACGCTTGGGAATCACCCATATTTTGTGTTTGTGTACTAATGAAATTGGACAGTCAGATTCTCAGTTTCCTGATCTATTCACATACAAAAATTTCTCTGTGTGTGACAATGAGGATTCTAACATCAGCAGCATATTTGATGAAGCTTGTGATTTTATAGATTATGTTGAGCAAACAGGTCAGAGAGTTTTAGTTCATTGCTTCGAGGGAAAAAGCAGAAGTGTCACTTTGGTCCTTGCTTACTTAATGCTCAGGAAGAAGTTCACCTTATTAGAAGCATGGAATGCTCTGAAACAAGTGCACCGTCGAGCACAGCCCAATGATGGTTTTGCAAAGATCTTACTGGAGCTGGATCAGAAACTGCATGGGAAGGTTTCAATGGAATGGCAGCAACGAAAACCAATGATGAAAATTTGCCCTATATGTGGCAAGAATGCTGGACTTAGCAGCAGCTCACTTAAGCTCCATCTTCAGAAATCACATAGAAAGCTATCATCAGGGAGCGTAGATAGTGCCATGACAATGGAGATCCAAAAGGCATTAACAGCTTTGAAGATTAGCCGTGGTGGGAGTGTCAGCCCCATACAAAGGAACAAGTCTCATTTAATGATAGATTAA 2736 0.4218 MWEWELQGKGEEKQLELENEEAKTPLPLSVTSRALYMLGDIKAGPAFKFTQWLQLVRKRTSNYRSSGFPHRPSTMPSRFLTTYWESTRDAKIEQLPEQTEISLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTCSNEHSEDEMNRALEVTVNSGGVVFFAFFNGLGTDDVFPKESAAVIKISSSRMATQSERLGYEFAKWLGVETPQARVIHNTSSEWLQIKKATEKVRDAANSAGDEIGEMTSLELLEALELSRCLLFMSYVHGLPLLESSSAFESQDSAERISAALGRIMMLDLVIRNEDRLPCRELRWRGNSANLLLAEKMISANTDTLGEAFDSAMNQYGPRVIRALKKERRSASVDSRLNSQNLGMESQGSYLSEIRESLTSTDMSLKSQTSRKSLFTDFNIVAIDSGVPRRPPAGKRADDQVNYPKLVELLLNSSEFSSNLLHDITGGRLGCPSPEDINTTTDVHASDATSVVHEFRSGFRAALRDLQGFHLFLLTLSQKLDNLLRSIISKISLGESEKEDSVVPDSPSPIAAGSCPSPISHQDFSDSESQRTAPRASSSSGNRDCCDSASSVSRDCSHGKFSKGSGEPLHGLRLTAKLRDFHKFAKVDTESYKELEQWNEMLKNDVIKLCQENNFNTGFFEGSDNNTVVDTYELKVRLEHILERIVLISEAANTEKPSAVTNSLFIGGALAARSIYTLQRLGITHILCLCTNEIGQSDSQFPDLFTYKNFSVCDNEDSNISSIFDEACDFIDYVEQTGQRVLVHCFEGKSRSVTLVLAYLMLRKKFTLLEAWNALKQVHRRAQPNDGFAKILLELDQKLHGKVSMEWQQRKPMMKICPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALKISRGGSVSPIQRNKSHLMID. 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01778 911 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g01778 911 CDD DSP 685 822 - -
Seca4g01778 911 FunFam Dual specificity protein phosphatase PHS1 656 830 - -
Seca4g01778 911 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 17 907 IPR035010 GO:0004721|GO:0009737|GO:0043622
Seca4g01778 911 MobiDBLite consensus disorder prediction 524 573 - -
Seca4g01778 911 MobiDBLite consensus disorder prediction 541 573 - -
Seca4g01778 911 Gene3D Protein tyrosine phosphatase superfamily 666 839 IPR029021 -
Seca4g01778 911 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g01778 911 ProSiteProfiles Dual specificity protein phosphatase domain profile. 684 829 IPR020422 GO:0006470|GO:0008138
Seca4g01778 911 Pfam Dual specificity phosphatase, catalytic domain 699 825 IPR000340 GO:0008138|GO:0016311
Seca4g01778 911 SMART dsp_5 684 826 IPR020422 GO:0006470|GO:0008138
Seca4g01778 911 SUPERFAMILY Protein kinase-like (PK-like) 51 428 IPR011009 -
Seca4g01778 911 Gene3D - 266 421 IPR036940 -
Seca4g01778 911 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 683 829 IPR029021 -
Seca4g01778 911 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 753 805 IPR000387 GO:0016311|GO:0016791
Seca4g01778 911 Pfam Actin-fragmin kinase, catalytic 100 394 IPR015275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01778 Seca-Chr4 29198459 29205181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01778 7 895 Protein tyrosine phosphatase (PTP) family AT5G23720 63.727 0.0 1104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01778 K14165 - gmx:102661225 1361.67