Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01772 ATGGCAGCTTTTTCATACCAATACCATCCTTTCCTTGTTGACTCAGCATTTTTGCTTAACATAAACACTGGTCCTCCTCCAACTCCTACTCCTCAGTTTCCCTTTAACCAGGAAACCTCTTTCAATGTCACAAATCAGGATACTAGCTGTGTTGATCAAAGCTCCAAGATTACCATCAGTGACAATGAGCCTTCTGTCACTAAAAACCTTAGTCCTCAATCTTCCATGGTAGTGGACAAGCTTGAAACTGGTGAACAGGTCACTCAGAAGGTGACCCCTATGGAGAGAAAAAGGAGAACCAGAAATGGATCTTCCTTGAATAATCACCAATCTAAGGAAACTGTTACAGAAGGGAGGAACAAGAAACAGAAGAAGAGCAATGGTGAGGTGAGAGAAGAGGACAGGGCAAAAACAGAGAAGAAGGATCAGAAAAAATGTCCAGAAGAGCCCCCAACAGGTTATATCCACGTCAGAGCAAGAAGGGGTCAGGCTACTGATAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAAATAAGTGAAAGGATGAAGAAGTTGCAAAGACTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCACTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTGGAGTTCTTGTCCATGAAGCTTGCTTCTGTGAATCCTATGTTCTATGATTTGGCAACAGACCTAGACACACTCTTGGTTAGACCAGAGAAATTAAATAGCTTAGCATCACCATCACCACTATCATCAGTGTCACATTGCAACAGTCCTAATAACCAAGCAACAACTTTTGCTGATACAACCACCATGACCCCCACAACCATTTTCCCTACTGCAAGTGACTACCTTATGGATACTTCAACATCACTTTTTCTACAAGGGCAGAGGTCAACAAATGTCCTCTCTGAGGATACCGGTAGTCATTTCTGGGACGCAGAAGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAA 1029 0.4257 MAAFSYQYHPFLVDSAFLLNINTGPPPTPTPQFPFNQETSFNVTNQDTSCVDQSSKITISDNEPSVTKNLSPQSSMVVDKLETGEQVTQKVTPMERKRRTRNGSSLNNHQSKETVTEGRNKKQKKSNGEVREEDRAKTEKKDQKKCPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDLATDLDTLLVRPEKLNSLASPSPLSSVSHCNSPNNQATTFADTTTMTPTTIFPTASDYLMDTSTSLFLQGQRSTNVLSEDTGSHFWDAEDQRQKFLHPYGFSNNLCSFH. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01772 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
Seca4g01772 342 MobiDBLite consensus disorder prediction 254 274 - -
Seca4g01772 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 49 264 IPR024097 GO:0006355
Seca4g01772 342 MobiDBLite consensus disorder prediction 114 173 - -
Seca4g01772 342 Gene3D - 160 233 IPR036638 GO:0046983
Seca4g01772 342 SMART finulus 169 219 IPR011598 GO:0046983
Seca4g01772 342 FunFam Basic helix-loop-helix transcription factor 160 232 - -
Seca4g01772 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 230 IPR036638 GO:0046983
Seca4g01772 342 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Seca4g01772 342 MobiDBLite consensus disorder prediction 81 173 - -
Seca4g01772 342 CDD bHLH_AtBPE_like 153 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01772 Seca-Chr4 29061707 29064865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01772 119 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 67.969 1.11e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g01772 HLH 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01772 - - gmx:100806696 538.11