Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01760 ATGAAAGAATCAACGGAATCGGACCCCATCCCCCTTTGCCTCCACCTCCTGTGTTCCCTCCTCGATCAGGAAATCCCCACCGTCCACCATCTCAAAGGCAAGTGGTCCCTCGCCCGAGTCAAACTCACCCACCTCCAAACCCACCTCGCCGATTTCTCCGCTGAATACCCCAAATCCTCCGCATCCAACCCTCTCTCCCTCGACCTTCTCCATTCCCTCTCTCACACCCTCCACGACGCCGTTTCGCTCGCTCGCCAATGTCACTCCCCCAACTTACCCCGCGGCAAACTCCAAACCCAAAGCGACCTCGACTCCCTCCTCGCCACACTCGATCGCCACGTCACCGACTGCGACATCCTCTTCCGCAGCGGCGTCCTCCTCGAAACTAACCCCGCTTCTTCTAAAAGAGAAGCCGTTCGATCCGCTTCTAGAAACTTCATAACCCGTTTGCAAATCGGGTCACCCGACTCCAGAGCCTCCGCCATGGACTCCCTCCTCGCTCTCCTCCACGAGGACGACAAGAACGTCACCATAGCCGTCGCTCAGGGTGTGGTCCCAGTTCTCGTTCGACTACTCGATTCCTCCTCCGAGATGAAGGAGAAAACCGTCGCCGCCATTTCTAGAGTCTCCACTGTTGAAAGCGGCAAGAACGTCCTCGTCGCGGAGGGTTTGTTGCTGCTGAATCATTTGCTTAGGGTTCTTGACTCAGGGAGTGGGTTAGCCATGGAGAAGGCTTGCGTGGCGCTTCAAGCGTTGAGTTTCACCAAGGACAACGCTAGAGCCATTGGATCCAGAGGTGGAATCTCTTCGCTGTTAGGGATTTGCCAGGCTGGCACACCTGGTTCACAAGCTTCTGCGGCGGCGGTTTTGAGGAATCTTGCAAAGTTCGCTGAAATCAGACAGAATTTCACGGAGGAGAATGCGGTTGTTGTTCTCTTGGGGGTGGCTTCTTCCGGAACTGTTTTGGCTAGAGAAAACGCGATTGGGTGTTTGGCTAATTTGATTTCGGAGGATGAAAATTTGAGGGTTTCGGTGGTTAAAGAAGGTGGAGTTGAATGTTTGAGGAATTTCTGGGATTCAGGTCCACAGGTTCAGAGTCTTGAAGTTGCGGTTGAGGTTTTGAGGCATTTAGCTTCGAGTGCTCCTATTGCTGAGGTGCTTGTTACTGAAGGGTTCGTGGAGAGGGTGATGGGGGTGCTGAATTGTGAGGTTTTGGCAGTGAGAATTGCGGCGGCTAGAGCTGTTTATGCTTTGGGGTTGAGCAGTGGCAAGACGAGGAAGGAAATGGGGGAGTGTGGGTGTGTTCCCCTTCTGATTAAGATGTTGGATGGGAAGGGTGTGGAGGAGAAAGAAGCAGCTGCGATGGCATTGTCGGTGCTTCTGCTTCACCCTGGGAATAGGAGGGTTTTCAGAAAGGATGAGAGGGGAATAGTGAGTGCTGTTCATCTCTTGAACCCTTCATTGCACAATTTGGATAAGCAATACCCTGTTTCGTTGCTCCACTCGCTCTTGCATTCCAAGAGTTGCAAGAAACAAATGGTGGCAGCTGGGGCTTGTGTATATACGCAGAAGCTTGTTGAGATGGATGTCCCTGGGTCCAAGAAACTATTGGAGGGCCTTGGTCGTGGTAAGATATGGGGAGTTTTTGCAAGACCCTAG 1659 0.528 MKESTESDPIPLCLHLLCSLLDQEIPTVHHLKGKWSLARVKLTHLQTHLADFSAEYPKSSASNPLSLDLLHSLSHTLHDAVSLARQCHSPNLPRGKLQTQSDLDSLLATLDRHVTDCDILFRSGVLLETNPASSKREAVRSASRNFITRLQIGSPDSRASAMDSLLALLHEDDKNVTIAVAQGVVPVLVRLLDSSSEMKEKTVAAISRVSTVESGKNVLVAEGLLLLNHLLRVLDSGSGLAMEKACVALQALSFTKDNARAIGSRGGISSLLGICQAGTPGSQASAAAVLRNLAKFAEIRQNFTEENAVVVLLGVASSGTVLARENAIGCLANLISEDENLRVSVVKEGGVECLRNFWDSGPQVQSLEVAVEVLRHLASSAPIAEVLVTEGFVERVMGVLNCEVLAVRIAAARAVYALGLSSGKTRKEMGECGCVPLLIKMLDGKGVEEKEAAAMALSVLLLHPGNRRVFRKDERGIVSAVHLLNPSLHNLDKQYPVSLLHSLLHSKSCKKQMVAAGACVYTQKLVEMDVPGSKKLLEGLGRGKIWGVFARP. 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01760 552 Gene3D - 132 360 IPR011989 -
Seca4g01760 552 Gene3D - 361 530 IPR011989 -
Seca4g01760 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 224 IPR000225 GO:0005515
Seca4g01760 552 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 550 - -
Seca4g01760 552 SUPERFAMILY ARM repeat 146 490 IPR016024 -
Seca4g01760 552 SMART arm_5 255 295 IPR000225 GO:0005515
Seca4g01760 552 SMART arm_5 296 336 IPR000225 GO:0005515
Seca4g01760 552 SMART arm_5 172 211 IPR000225 GO:0005515
Seca4g01760 552 SMART arm_5 380 420 IPR000225 GO:0005515
Seca4g01760 552 SMART arm_5 338 379 IPR000225 GO:0005515
Seca4g01760 552 SMART arm_5 421 462 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01760 Seca-Chr4 28752116 28753774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01760 78 460 U-box Gene Family AT2G23140 25.065 9.37e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01760 - - gmx:100807228 785.408