Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01734 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATATGGTTGATGTGGATGAGGCAACCTTACCCAACATAGAAACAATGGATGAGTCAAGCAGATTTGGAGTTTATAGAGTGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCAGGTGGGGAATTCTGTCACTGAAACAACACTACCTAAGTTTAAAGAGGCTTCTGCTGCTGCAGTCTCCAAAATGGTATCCTCTCCTTCAGGGTCTTCAAAGAGAGCTAGAGCCATTAACAATGCAACCCTGAGAGTGTCATGCCTTGTGGACGGGTGCAATTCAGATCTTAGTAATTGTAGAGATTATCATAGGCGCCATAAGGTTTGTGAACTCCATTCCAAGACCCCTGAGGTCACAATTGGTGGCCAGAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGGAAACGTTTAGATGGACACAACCGACGGAGAAGAAAGCCTCAGCCCGAACCTCTCACGCGACCTGGTAGTTTTTTGTCTAATTACCAAGGCACCCAGTTGCTACCCTTCTCAAGTTCCACTGCCATGGTGAACCCTGCTTGGAGTGGTGGACTTGTTGCTTCCTGTGCAGGTGCTAGGCTGCAGAACCACAACCAACACCAACAAGATCTTCTTCTTGGATCTTCTCCAAGTCAAACCAGCTATAAAGAAGGGAAGCAACTCTCATTCTTACATGGTGACAATCCCTCTGTGGCTACACTCAATGATCAAAATCCACATCTTCCAGCTGCTTCTGTGTGCCAGACACTTGTCAGGACTAGCCCTTTGTTAGAAAGTTGTGGGGTGAGAAGCAAAATGTTCTGTGATAGCTTAACAAGTTCAGTCCACGACTCCCCTTGTGCTCTCTCTCTTCTGTCATCATCATCACAGACGCACACACCTGGGAATGGTTTAAATCAAATGGTGCAGCCTCACTCAATGTCAATGTCAATGTCCCTTATGCAGACACCTTTAGGCCTGAGCTTGCATGATAACAGCTTAGAGTCCATGGACAGAGTCTTGGTTCCCAATGGAAGTGACCATTCTTCCTCAATGTATAACATGGGTTCTGATGGATCCCCTCAACTATTTCCCTTTCAATGGGAATAG 1158 0.4603 MDWNLKAPSWDMVDVDEATLPNIETMDESSRFGVYRVKGEFSVDLKLGQVGNSVTETTLPKFKEASAAAVSKMVSSPSGSSKRARAINNATLRVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGQKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFSSSTAMVNPAWSGGLVASCAGARLQNHNQHQQDLLLGSSPSQTSYKEGKQLSFLHGDNPSVATLNDQNPHLPAASVCQTLVRTSPLLESCGVRSKMFCDSLTSSVHDSPCALSLLSSSSQTHTPGNGLNQMVQPHSMSMSMSLMQTPLGLSLHDNSLESMDRVLVPNGSDHSSSMYNMGSDGSPQLFPFQWE. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01734 385 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 75 366 IPR044817 GO:0003677
Seca4g01734 385 Pfam SBP domain 96 169 IPR004333 GO:0003677
Seca4g01734 385 Gene3D - 88 157 IPR036893 GO:0003677|GO:0005634
Seca4g01734 385 ProSiteProfiles Zinc finger SBP-type profile. 93 170 IPR004333 GO:0003677
Seca4g01734 385 FunFam Squamosa promoter-binding-like protein 14 87 157 - -
Seca4g01734 385 MobiDBLite consensus disorder prediction 157 183 - -
Seca4g01734 385 SUPERFAMILY SBT domain 94 175 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01734 Seca-Chr4 28113234 28117052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01734 1 385 SBP-box Gene Family AT5G50670 41.176 1.41e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca4g01734 SBP 3.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01734 - - gmx:100787407 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01734 4 28113234 28117052 Seca4g01734 4 28113234 28117052 ECH
Seca12g06434 12 156426842 156429603 Seca4g01734 4 28113234 28117052 PCT