Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01730 ATGGGAAGAGGGAAAGTGAAGCTGAACAAAATTGAGAACCCAACAAGCAGGCAGGTGACCTTCTCAAAGAGGAGGAATGGGTTGATCAAGAAGGCCTCTGAGCTTTCCATCTTATGTGAGGCTGAAGTTGCCCTTGTTCTCTTCTCTTCATCTGGAAAGGGTTACCATTTTGCTAGCCACGACGTGTATAGGACCATTTCGAGGTATCGTTGTCAAGTGGGACTGCCCCAATCAAATATCAATTGCTTAAGAACTGCAGAGACTTGGAGGACTGAAATTGATGAATTAAGGAGATCGGTGGACAACACGCAAGCAAGACTAAAGCATTTAGCAGGAGAGGATCTGTCAACACTAGGCATGAAAGAATTGAATCAACTAGAGCGACAATTGAGTACTGGAATTAAACGCATCAACTCTACCAAGAAACATGTCAACGCTGAGAACAGAGCCAGGCTTATGAAAAGGATTAAAGCCCTACAAGAGGATAACACACATCTTCAGAAAAAAGTGAGCCTCCAGCAACAGTAG 528 0.4394 MGRGKVKLNKIENPTSRQVTFSKRRNGLIKKASELSILCEAEVALVLFSSSGKGYHFASHDVYRTISRYRCQVGLPQSNINCLRTAETWRTEIDELRRSVDNTQARLKHLAGEDLSTLGMKELNQLERQLSTGIKRINSTKKHVNAENRARLMKRIKALQEDNTHLQKKVSLQQQ. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01730 175 Coils Coil 149 175 - -
Seca4g01730 175 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Seca4g01730 175 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Seca4g01730 175 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 157 - -
Seca4g01730 175 Coils Coil 86 113 - -
Seca4g01730 175 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca4g01730 175 ProSiteProfiles K-box domain profile. 86 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca4g01730 175 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Seca4g01730 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca4g01730 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca4g01730 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca4g01730 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca4g01730 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca4g01730 175 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01730 Seca-Chr4 28033680 28036031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01730 1 175 MADS-box Gene Family AT2G42830 43.716 1.56e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca4g01730 K-box 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01730 K09264 - qsu:112006468 222.631