Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01720 ATGAGAAACAGTATAAAAACCTCTCACCATCTTGGCCAAACATGCACCGCACAGAGTAAGCTTTGGAACTCTGATCGGAGCCCAATTCTGTCAACTTTTGGTTCCAAAATCATACCCAAAACACAAGGAACTTCCTCATCTCAATTTCCTGTTGCGCTTCATTCCTGTTTCTTCAGGGTCCTCGGTGTGCAACCCTTGGCTGATGACGAAACAATTCGAAGAGGGTATAGAAAACTGGCTCTCACTCTGCACCCTGATAAAAATAAATCAGTAGGTGCGGATGGGGCATTTAATCTTATAACACAAGCTTGGAGTTTATTATCTGATAAAGCCAAGAGAGCCAGCTTTGACCAACATTACAATTTATGGGGTATATATCAGGGAGTTCCAGGTGGAAAGGCTTATGTGCCAGCTAATCAGAATGGTTTCTTTAACCTCAATACTGCTAATTGGAAGGACAGAGATCATAGAAGTGCTGCTCATCCCAATCCTATGCCAGCTAGTCAGAATGGTTTCTATAACCTCAATACTGCTAATTGGAAGGACAGAGATCATAGGAATGCTGGTCATCCCAATCCTACTTCAGGATCTCCTTTGTCATTGAAACGGACATTCTGGACTATGTGCAGTTCCTGCAGGACACAGTTTGAGTATGAACTTGTTTATTTCAACCTCCATCTTGTCTGCACCAGCTGCAATAAACCATTTTTTGCTTTTGAGGCCCCACCCCCATCTGCATTCGGAAATGCTTCCTCCACTTCAAGAATTTCTCAGATGAAGCAACATAACTTCAACCCAACCAGAATGGAAAGAAACTACCATGTTTCAGGAAGGACACCAATGTCTGCTGTCAACTCATCACTCGGGTCAGGTCCTTTCTCTATTCCCGGTGGTATTTCCAGTGGACTGACATCAGCTTCTGCTGCTGCTGAATCTCCTGGTTTTTTTAGGATGTCATCCGAGAATTTGAAGAGAAAGCATGAAGATTCACAACCTGTCATGAGGGAGGGGATGCATTTTGTGAAAACTCATGCTGTTGAGAGAGCTTTTGCTGGTTCAACATATCATGCCTCTTATTTTGGTTCAAATTCTATTCTGAAAGGAGATGGATCAAGGAAAAAAAGGCGCACAGATGAACATAAAGTTGATAGTGATAGAAGGGATATGGAAACTGAGATAGCATCTCAGAAGGATAGTTTTTATACAGGAAGGGTTAATGCTGCTGGAAATTATAAACGTAATGGTATTAGGGATGTATCACAGCTGCAAATGAAGAACCTTTTGATGGAAAAGGCTCGGAATGAGATTCGCAAAAAGCTTGATGAATGGAATGTTGCTGCTGCAGCATCAAGGAATTTAGACAAGTCAAAGAATACTGATACAGAGGTCAGACTGAAGGACAACAAAGGGGCTATAAATGGTGTGAAGAATACACAAGAATTTGTTGATTCTGAGACCATTGACAAAAAGTGTTTGTCTGCTGATTCAGAGGTTGCTGATTCTCTCTCCATGAGTGTTCCAGACCCAGATTTCCATGATTTCGATGGAGACCGTATTGAAAACACTTTTGGGGAAAACCAGGTGTGGGCTGTATATGATGATGATGATGGCATGCCTCGCTACTATGCCTTAATCCATGATGTAATCTCAAAAAGTCCTTTCAAAATGAGGATTAGCTGGCTGAACTCTAAAACCAATGATGAATTGGCCCCAATAAAGTGGGTCAGTTATGGCTTTCCAAAGACCGCTGGAGATTTCCATATAGGCAAGCGTGTAACCTATACCACTCTCAATTCCTTCTCGCACAGGGTTAAGTGGACAAAAGGTTCAAGAGGGGCTGTCCATATATATCCAAAGAAAGGGGAGGTTTGGGCTCTGTATCGGAACTGGTCCCTTGACTGGAATGAATTTACTGAAGATGAAATCATACACAAATATGACATGGTGGAAGTGCTGGAAGACTATAATGAAGAGCTAGGTGTGAATGTTGCCCCACTTGTCAAGGTTGCAGGTTTCAAGACAGTATTCTGCCAGAATGCTGATCCAAGAAAAATCAGGAATATTCCAAAGGCGGAGATGTTTCGTTTTTCACACCAGGTACCTTCATACTTGCTTACTGGTGAAGAAGGTCATAATGCTCCTAAAGGTTGCTTGGAGCTTGATCCTGCTGCCACGCCTATGGAACTTCTTCAGGCGACCACTGAAGCTCCAAAGCAAGAAATGGAAATGACAGTTGAAAAGTCTTTAAAAGATGAATTGAGGCACAAGGAGAATTCCAGGGAGAATGGTTTTGTTGAGAGGGGCCAAACAACAAGGGAAGAAGATTCTAAAAACCATGTGGCTGAACTACAGGCGGAGAAGGAAAGTAGGCCTGAGATTTTGTTTGTATATCAACGGAAACGTCTAAAGAAAAAAGGAGTGTGCTATGAAGTGGCAACTGGCAAGTAA 2448 0.4236 MRNSIKTSHHLGQTCTAQSKLWNSDRSPILSTFGSKIIPKTQGTSSSQFPVALHSCFFRVLGVQPLADDETIRRGYRKLALTLHPDKNKSVGADGAFNLITQAWSLLSDKAKRASFDQHYNLWGIYQGVPGGKAYVPANQNGFFNLNTANWKDRDHRSAAHPNPMPASQNGFYNLNTANWKDRDHRNAGHPNPTSGSPLSLKRTFWTMCSSCRTQFEYELVYFNLHLVCTSCNKPFFAFEAPPPSAFGNASSTSRISQMKQHNFNPTRMERNYHVSGRTPMSAVNSSLGSGPFSIPGGISSGLTSASAAAESPGFFRMSSENLKRKHEDSQPVMREGMHFVKTHAVERAFAGSTYHASYFGSNSILKGDGSRKKRRTDEHKVDSDRRDMETEIASQKDSFYTGRVNAAGNYKRNGIRDVSQLQMKNLLMEKARNEIRKKLDEWNVAAAASRNLDKSKNTDTEVRLKDNKGAINGVKNTQEFVDSETIDKKCLSADSEVADSLSMSVPDPDFHDFDGDRIENTFGENQVWAVYDDDDGMPRYYALIHDVISKSPFKMRISWLNSKTNDELAPIKWVSYGFPKTAGDFHIGKRVTYTTLNSFSHRVKWTKGSRGAVHIYPKKGEVWALYRNWSLDWNEFTEDEIIHKYDMVEVLEDYNEELGVNVAPLVKVAGFKTVFCQNADPRKIRNIPKAEMFRFSHQVPSYLLTGEEGHNAPKGCLELDPAATPMELLQATTEAPKQEMEMTVEKSLKDELRHKENSRENGFVERGQTTREEDSKNHVAELQAEKESRPEILFVYQRKRLKKKGVCYEVATGK. 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01720 815 Gene3D DnaJ domain 54 160 IPR036869 -
Seca4g01720 815 PANTHER BNAC03G44070D PROTEIN 57 726 - -
Seca4g01720 815 ProSiteProfiles dnaJ domain profile. 56 120 IPR001623 -
Seca4g01720 815 SUPERFAMILY Chaperone J-domain 56 144 IPR036869 -
Seca4g01720 815 MobiDBLite consensus disorder prediction 366 391 - -
Seca4g01720 815 CDD DnaJ 56 109 IPR001623 -
Seca4g01720 815 ProSitePatterns Nt-dnaJ domain signature. 97 116 IPR018253 -
Seca4g01720 815 MobiDBLite consensus disorder prediction 751 785 - -
Seca4g01720 815 Coils Coil 422 442 - -
Seca4g01720 815 PRINTS DnaJ domain signature 58 76 IPR001623 -
Seca4g01720 815 PRINTS DnaJ domain signature 92 112 IPR001623 -
Seca4g01720 815 PRINTS DnaJ domain signature 76 91 IPR001623 -
Seca4g01720 815 MobiDBLite consensus disorder prediction 368 391 - -
Seca4g01720 815 SMART dnaj_3 55 112 IPR001623 -
Seca4g01720 815 Pfam DnaJ domain 57 117 IPR001623 -
Seca4g01720 815 Pfam Domain of unknown function (DUF3444) 502 709 IPR024593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01720 Seca-Chr4 27894325 27898202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01720 57 244 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 28.042 2.77e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01720 - - gmx:100797672 953.355