Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01719 ATGGAGAACAACCAGCAGTCCCAATCGGCGGCGTCCTATCCAACTCAACAACCACCGCCGGCTGCTGCTGCTCCTGCTCCATTCCACCACCTGTTGCAGCAGCAACAGCAGCAGCTCCAAATGTTCTGGTCGTATCAGCGTCAAGAAATCGAGCACGTCAACGATTTCAAGAACCACCAGCTCCCCTTGGCTCGCATCAAGAAGATAATGAAAGCCGACGAAGACGTTCGCATGATCTCTGCTGAGGCCCCAATCCTGTTCGCCAAGGCCTGCGAGCTCTTCATCCTTGAACTCACTATCAGGTCATGGCTCCATGCCGAGGAGAACAAGCGCCGAACCCTTCAAAAGAACGATATCGCCGCTGCAATCACTCGCACCGACATTTTCGACTTCCTTGTTGATATCGTCCCACGCGACGAGATCAGGGATGAGGCTTCCATCGTCGGCGCCGCCGCCGCCGCCGCCGCCAGCGGCGTTCCTTATTACTACCCTCCCATGGGCCAGCCCGCTGGCATGATGATTGGACGCCCTGCCGTTGATCCTGCCACCGGCGTTTACGTCCAGCCACCCTCCCAGGCCTGGCAGTCCGTCTGGCAGACCGCCGCCGAGGATGCCTCTTACGGCAACGCCGGCACCAGTGGTCAGCCCAATCTTGATGGCCAGAGGAAGTCAAGCCAGCAGTTGACCCATATACACCTGTGCTTCAACACACAGCTGAATGACTATAATGCCTTTGATGGACTGTTGGGGTTATAA 756 0.5714 MENNQQSQSAASYPTQQPPPAAAAPAPFHHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIRDEASIVGAAAAAAASGVPYYYPPMGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQTAAEDASYGNAGTSGQPNLDGQRKSSQQLTHIHLCFNTQLNDYNAFDGLLGL. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01719 251 Gene3D Histone, subunit A 27 138 IPR009072 GO:0046982
Seca4g01719 251 FunFam Nuclear transcription factor Y subunit gamma 29 138 - -
Seca4g01719 251 MobiDBLite consensus disorder prediction 1 16 - -
Seca4g01719 251 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 198 - -
Seca4g01719 251 SUPERFAMILY Histone-fold 31 132 IPR009072 GO:0046982
Seca4g01719 251 Pfam Core histone H2A/H2B/H3/H4 3 123 IPR007125 GO:0003677
Seca4g01719 251 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01719 Seca-Chr4 27883517 27888166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01719 21 221 CCAAT-HAP5 Transcription Factor Family AT3G48590 82.775 5.62e-108 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca4g01719 Histone 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01719 - - gmx:100818447 345.895