Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01707 ATGTTCTTGGAAGAAAACTGCTCTGCATTATTTCTATTCAATGTTAACATATTTGCAATTGGGCATTTTCAATGCAGTGAGAATCTGCCAGACAAGTACAAAGAGTGCCATCAGCGACCTTTATATTTTGATGGGTTCAACTCTTTATTTTTGTACAGGAGATTATACCGAAGTCATAACACATTGAATGCATTTTGTGCAGATGACGGAAATGTGGAGAGAATCAAAGACATCTCATTGAAGGACTTCTATAACAAGTATGACAAAGAAGCCGGGATCTTTCTAGACAATGGTATTCAGGTTATGCTTACTGGATTGGCTGATACATGGCCTGCCAGGCATAAATGGACAACTGATCAGTTGTTGCTAAACTATGGAGATGTAGCATTTAAAATTTCTCAAAGGAGTGCCCGGAAGATCTCCATGAAGTTCAAGGATTATGTCTCATACATGAAAGTTCAGCATGATGAAGATCCCTTATATATTTTTGATGAAAAGTTTGGAGAAGTTGCACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGATACAGATAAACGTCCATCCTATAGATGGCTCATAATTGGACCACAGAGATCTGGGGCCTCTTGGCATGTTGATCCAGCTCTTACCAGTGCATGGGATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCTCCAGGAAAGGTGCCTTTAGGTGTGACAGTACATGTTAATGAAGAAGATGGTGACGTCAATGTTGCGACTCCATCATCACTGCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGATGAAGACAAGCCAATTGAGTGTACACAACTACCTGGAGAGACAATTTACGTTCCAAGTGGATGGTGGCACTGCGTTCTAAATTTGGAAACAACTATTGCAGTCACAGAATTCCAATAA 948 0.3987 MFLEENCSALFLFNVNIFAIGHFQCSENLPDKYKECHQRPLYFDGFNSLFLYRRLYRSHNTLNAFCADDGNVERIKDISLKDFYNKYDKEAGIFLDNGIQVMLTGLADTWPARHKWTTDQLLLNYGDVAFKISQRSARKISMKFKDYVSYMKVQHDEDPLYIFDEKFGEVAPSLLKDYCVPHLFQEDFFDILDTDKRPSYRWLIIGPQRSGASWHVDPALTSAWDTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNVATPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTEFQ. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01707 315 ProSiteProfiles JmjC domain profile. 169 315 IPR003347 -
Seca4g01707 315 SMART cupin_9 160 315 IPR003347 -
Seca4g01707 315 Pfam Cupin-like domain 101 311 IPR041667 -
Seca4g01707 315 FunFam F-box protein At1g78280 52 315 - -
Seca4g01707 315 SUPERFAMILY Clavaminate synthase-like 94 312 - -
Seca4g01707 315 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 34 313 - -
Seca4g01707 315 Gene3D Cupin 52 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01707 Seca-Chr4 27740004 27743068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01707 22 313 Glycosyltransferase AT1G78280 67.808 6.15e-142 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca4g01707 Cupin_8 2.7e-19 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01707 - - gmx:100792541 530.791