Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01701 ATGGCGAGCAGAAGCGGTACCCAAGAAAGCATTGGCAAACCAATAAGATGCAAAGCTGCAATATGCAGAAAATCAGGCGAGCCTCTTGTTATAGAGGAAGTTGAGTTAGACCCACCAAAAGCCTGGGAGGTCCGGATCAAGATTTTATGCACCTCTCTCTGCCACTCTGATGTAACCTTTTGGAAAATGGATCCATCATTCCCAGCTGCTAAATTTCCAAGAATTTTTGGACACGAAGCTGTGGGAGTTGTGGAGAGCGTTGGGGAGCATGTGGAAGAAATTAAAGAGGGGGAGTTAGTGGTGCCGGTGTTCCTTCCAAACTGTGGAGAATGCAAAGATTGTGAAAGCAGAAAGAGTAACGTGTGCACTAAGTTTGGGAACAAGCTGGTTCATGACATGCCAAGAGACGGGACCAGCAGGTTTAGGGACCTCAAAGGAGACGTGGTGCATCATTTTTTCTGTGTTAGCAGCTTCTCTGAGTACACCGTTGTGGATGTGACCCATGTGGTTAAAATTAGCCATCACATTCCCATTGATAAGGCTTGCTTGCTCAGTTGCGGTGTTTCAACAGGGGTTGGTGCAGCATGGAAGGCGGCAGACGTAGAAAAAGGGTCCACGGTAGCTATTTTTGGGCTCGGTGCTGTAGGCCTAGCTGTTGCTGTAGCAGCAAAGCAACGAGGAGCGTCAAAGATCATAGGCATCGATCTAAATCATGAAAAATTCGAAATAGGAAAAAGATTTGGAGTAACTGATTTCGTGAATCCTTCCACATGCAAGGAGAAGTCAGTAAGCGAGGTGATCAAGGAAATGACAAATGGAGGTGCTGATTATTGCTTCGAATGCATAGGCTTGGCATCATTAATGGCAGAGGCTTTTAATAGTAGCCGGGATGTGCGCTCTCTCCCTCCTTTTAGAGTCTAA 921 0.4636 MASRSGTQESIGKPIRCKAAICRKSGEPLVIEEVELDPPKAWEVRIKILCTSLCHSDVTFWKMDPSFPAAKFPRIFGHEAVGVVESVGEHVEEIKEGELVVPVFLPNCGECKDCESRKSNVCTKFGNKLVHDMPRDGTSRFRDLKGDVVHHFFCVSSFSEYTVVDVTHVVKISHHIPIDKACLLSCGVSTGVGAAWKAADVEKGSTVAIFGLGAVGLAVAVAAKQRGASKIIGIDLNHEKFEIGKRFGVTDFVNPSTCKEKSVSEVIKEMTNGGADYCFECIGLASLMAEAFNSSRDVRSLPPFRV. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01701 306 FunFam S-(hydroxymethyl)glutathione dehydrogenase 191 300 - -
Seca4g01701 306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 296 IPR036291 -
Seca4g01701 306 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 77 91 IPR002328 GO:0008270|GO:0016491
Seca4g01701 306 PANTHER ALCOHOL DEHYDROGENASE 12 297 - -
Seca4g01701 306 FunFam alcohol dehydrogenase 1-like isoform X1 25 190 - -
Seca4g01701 306 SUPERFAMILY GroES-like 11 200 IPR011032 -
Seca4g01701 306 Gene3D - 191 297 - -
Seca4g01701 306 Gene3D - 21 190 - -
Seca4g01701 306 Pfam Zinc-binding dehydrogenase 214 294 IPR013149 -
Seca4g01701 306 Pfam Alcohol dehydrogenase GroES-like domain 43 172 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01701 Seca-Chr4 27655901 27666377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01701 43 274 Monolignol Biosynthesis Gene Families AT4G37970 25.490 1.93e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01701 K00121 - cave:132189734 451.055