Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01700 ATGTATGCAAAATGTGGGGCTCTTCAGACTACTGCTTCAAAGAATGTTGAAGAAGTGGATGGAAAAGTGGGGTCTGGTGCATTGTTTGTGAAGGTCAATATGGATGGTGCTCCTTATTTGAGAAAAGTAGACTTGAAGAATTACTCTGCATATTCAGAATTATCTTCTGCTCTGGAGAAGTTGTTTAGCTATTTCACCAAAGGTCAATGTGGATCTCTTGGAAATCTGGGCAGGGAGATGCTGAATGAAAACAAGCTGAAGGATCCGCTTCACGGGTCAGAATATGTTCTTACATATGAGGATAAAGATGGTGACTGGATGCTAGTGGGTGATGTCCCTTTGGAGATGTTTATTGATAAATGCAGAGGCCTTTGGATTCTCCTCAATGTCTTTGTAGGCGATCAACTTTTGGCTTGGGGTATCCCACCACTAAAACTTTTCTCAGAATTTTTATCAAAGATGCAAAGAAAGACTTCCAGCATTGGTGGCTGCAGCACTAATGCTAATGGCATACCTACAGACCGTGAAGTTGCTCTTATGATGCTAATGGCATACCTTTCCTATATGTTGGCTGAATTAATCTCTCTGAGTGGAATTCTCACTGTATTCTTTTGTGGGATTGTCATGTCTCATTATACTTGGCATAATGTGACTGAGAATTCAATAATCACTACCAAGCATGCTTTTGCAACCTTGTCACTTGTTGCTGAGATCTTTACCGTCCTTTATGTGGCCCTTGCTTGTGATGTTGATGGTGTACATGTTGGAAATAAGCTAGCAGTACAGGAATTTGTGATTCTCCCTGATGGGTCATTTCCTTCCAAGGAAGCAATGAAGATGGGTGTAAAAGTATTCAATCACTTGAGGAAAGTGGCTCTAGTGCCTGATGCTCAATTGTTTACCTTTTCCTTTCTTTTAGTTGTTTTTCTTTCTTGGTTTCAAGTTGGTATTGATTGA 957 0.4033 MYAKCGALQTTASKNVEEVDGKVGSGALFVKVNMDGAPYLRKVDLKNYSAYSELSSALEKLFSYFTKGQCGSLGNLGREMLNENKLKDPLHGSEYVLTYEDKDGDWMLVGDVPLEMFIDKCRGLWILLNVFVGDQLLAWGIPPLKLFSEFLSKMQRKTSSIGGCSTNANGIPTDREVALMMLMAYLSYMLAELISLSGILTVFFCGIVMSHYTWHNVTENSIITTKHAFATLSLVAEIFTVLYVALACDVDGVHVGNKLAVQEFVILPDGSFPSKEAMKMGVKVFNHLRKVALVPDAQLFTFSFLLVVFLSWFQVGID. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01700 318 Gene3D - 239 298 IPR036849 -
Seca4g01700 318 SUPERFAMILY CAD & PB1 domains 25 124 - -
Seca4g01700 318 ProSiteProfiles PB1 domain profile. 27 135 IPR000270 GO:0005515
Seca4g01700 318 Pfam AUX/IAA family 13 127 IPR033389 -
Seca4g01700 318 Pfam Sodium/hydrogen exchanger family 174 238 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca4g01700 318 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 21 127 IPR003311 GO:0005634|GO:0006355
Seca4g01700 318 Gene3D - 22 133 - -
Seca4g01700 318 FunFam Auxin-responsive protein 22 130 - -
Seca4g01700 318 SUPERFAMILY Enolase C-terminal domain-like 251 291 IPR036849 -
Seca4g01700 318 Pfam Enolase, C-terminal TIM barrel domain 252 292 IPR020810 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01700 Seca-Chr4 27653082 27654038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01700 173 251 Antiporters AT3G05030 81.250 6.87e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca4g01700 Na_H_Exchanger 2.4e-10 CL0064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01700 K14484 - gmx:100815447 192.2