Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01686 ATGGCGCTACTTCGTCTTCAATGCTTAGCTTCAACATCCACACAACACCATCTAACCTCTTTCTCATCCCTTCAAATTCACAACAAACCCTATTCCCAATCCTCCACCATTCTCTCCTTTTATCAGCCACCCTCTTCTTTTCACCCTCTTCCTCTATCCCTCTCCCATTCTCCAACCCTTATCAGAACCAAAGAAGCCCCTAATTTCCCTCTCAGATTCGCCTCTACATCTCAAGAACAAATCCAAGAAACCGAAACTGAAGAATTTTCTCGAACCAGGTTGCTCGCTCAGAACGTTCCCTGGACAAGCACCCCTGAAGACATTCGTTCTTTGTTCGAGAGACATGGAAAAGTCATCGAAGTTGAGCTTTCTATGTATAACAAAACCAGAAATAGGGGTTTGGCGTTTGTCGAAATGGGTTCCCCTGAAGAGGCTCTTGCGGCTCTCAATAGTCTCGAATCGTATGAGTATGAGGGTCGCATAATAAAACTCAATTATGCTCGGCCAAAAAAGAAGATAACTCCACCCCCTGAGGAACCAAAGCCAGTGGCATTTAACTTGTTTGTTGCAAACTTGCCCTATGATGCAAGGTCTAAAGATCTCAGGGAGTTTTTTGAATCAGGAAGTGGTAGAGTTGTTTCTACAGAGATTATATTTCATGATAACCCAAGAAGGTCATCTGGTTATGGATTTGTGTCCTTCAAGTCTAAGAAAGAAGCTAATGCAGCTCTTTCTGAGTTCCAAGGAAAGATTTTTATGGGAAGACCACTCAGGGTGGCACCTAGTAGGCGATTTGTTAAACTAGTAGAGGAGAGTGCAACACCTGAAGATACATCTTCTGAGTTGAGTGTGAATGAGGCACAAGCTGACAAGGCTGATTGA 882 0.4354 MALLRLQCLASTSTQHHLTSFSSLQIHNKPYSQSSTILSFYQPPSSFHPLPLSLSHSPTLIRTKEAPNFPLRFASTSQEQIQETETEEFSRTRLLAQNVPWTSTPEDIRSLFERHGKVIEVELSMYNKTRNRGLAFVEMGSPEEALAALNSLESYEYEGRIIKLNYARPKKKITPPPEEPKPVAFNLFVANLPYDARSKDLREFFESGSGRVVSTEIIFHDNPRRSSGYGFVSFKSKKEANAALSEFQGKIFMGRPLRVAPSRRFVKLVEESATPEDTSSELSVNEAQADKAD. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01686 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Seca4g01686 293 MobiDBLite consensus disorder prediction 271 293 - -
Seca4g01686 293 Gene3D - 174 281 IPR012677 -
Seca4g01686 293 SUPERFAMILY RNA-binding domain, RBD 77 175 IPR035979 GO:0003676
Seca4g01686 293 Gene3D - 62 173 IPR012677 -
Seca4g01686 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 258 IPR000504 GO:0003723
Seca4g01686 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 162 IPR000504 GO:0003723
Seca4g01686 293 SUPERFAMILY RNA-binding domain, RBD 177 265 IPR035979 GO:0003676
Seca4g01686 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 169 IPR000504 GO:0003723
Seca4g01686 293 PANTHER OS02G0815200 PROTEIN 13 261 - -
Seca4g01686 293 SMART rrm1_1 186 260 IPR000504 GO:0003723
Seca4g01686 293 SMART rrm1_1 93 165 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01686 Seca-Chr4 27438354 27440628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01686 92 264 Eukaryotic Initiation Factors Gene Family AT2G36660 27.322 1.13e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01686 - - gmx:100790439 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01686 4 27438354 27440628 Seca4g01686 4 27438354 27440628 ECH