Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01683 ATGGCACTAGAGGCTGTGGTTTTCCCACAAGATCCATTCACATATAATAGTAAGGATTACTTGTACTCATTAGTAGGTAATGGATCTTGGGGCCATGACTATGGACTCCTCCAAGAAGTAGAAGAAGAGAAAGTCCTTCTTGGAATTATCAACAACAACAACATTGAAAACAAACTTCATGCAAATTGGGATTCTTCTTCCTCTTCTTTGTTGCAAAATGTCAAAGACCAATGGGATTCTCATTCCTCCCCTGAAATTGATCAATCTCTCACACCAACTAATTTCCCTCCTCCTCTTCATTCCGTTGAAGAACCCATCACAGTCACCAACATGAGTCGCAGAAAACGACGTCGTACCAAGAACGCCAAAAACAAAGAGGAAATCGAGAATCAGAGAATGACACACATTGCAGTTGAACGCAATCGCCGAAAACAGATGAATGAGTACCTTGCTGTTCTTAGATCCTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCTTCTATTATTGGAGGTGCTATTAACTTTGTGAAGGAGTTAGAGCAGCTTTTACAGTCCATGGAGGGTCAAAAGAAAACAAATTTAAACCAACCACACAAGAATGTTATAAATGGCTCATCACCCTTTGCTGAGTTTTTCACTTTTCCTCAGTACACAACAGGTGCAACTCAGAACAATATGACTTCCCCAGCCACAACAATGATGGTACAAAATCAAGAACAGAAACAGTTGGCTGTTGCAGACATTGAAGTCACCATGGTAGATAGTCATGCCAATCTTAAGATACTCTCAAAGAAACGACCTGGTCATCTTATGAAGATTGTTGTTGGGCTTCAAAGTCTTAAGCTCACAATTCTCCACCTTAATGTTACCACTTTGGATGATATGGTCCTTTACTCAGTTAGTGTAAAGGTAGAGGAGGGGTGTCAGCTGAACACGGTGGATGAAATTGCGGCTGCTGTGAATGAGCTATTACGCACACTGCAAGAAGAAGTGGCTTTCAGCTGA 1011 0.4135 MALEAVVFPQDPFTYNSKDYLYSLVGNGSWGHDYGLLQEVEEEKVLLGIINNNNIENKLHANWDSSSSSLLQNVKDQWDSHSSPEIDQSLTPTNFPPPLHSVEEPITVTNMSRRKRRRTKNAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKKTNLNQPHKNVINGSSPFAEFFTFPQYTTGATQNNMTSPATTMMVQNQEQKQLAVADIEVTMVDSHANLKILSKKRPGHLMKIVVGLQSLKLTILHLNVTTLDDMVLYSVSVKVEEGCQLNTVDEIAAAVNELLRTLQEEVAFS. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01683 336 SMART finulus 136 187 IPR011598 GO:0046983
Seca4g01683 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 198 IPR036638 GO:0046983
Seca4g01683 336 Coils Coil 178 198 - -
Seca4g01683 336 Pfam Helix-loop-helix DNA-binding domain 131 182 IPR011598 GO:0046983
Seca4g01683 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 181 IPR011598 GO:0046983
Seca4g01683 336 CDD bHLH_AtFAMA_like 133 195 - -
Seca4g01683 336 PANTHER MAX DIMERIZATION, MAD 88 332 - -
Seca4g01683 336 MobiDBLite consensus disorder prediction 79 96 - -
Seca4g01683 336 Gene3D - 120 198 IPR036638 GO:0046983
Seca4g01683 336 FunFam Basic helix-loop-helix transcription factor 121 196 - -
Seca4g01683 336 MobiDBLite consensus disorder prediction 79 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01683 Seca-Chr4 27417278 27419939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01683 1 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G22490 48.607 1.75e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g01683 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01683 - - gmx:100789380 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01683 4 27417278 27419939 Seca4g01683 4 27417278 27419939 ECH
Seca8g01925 8 40049839 40052968 Seca4g01683 4 27417278 27419939 PCT