Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01682 ATGACCACTCTCACACTCAAACTACACTCCAATTTTCAACATGGCCTCTTTCTCCTCCTTGTTCTTCTCATACAAGCTCCGCCGCCGGCAACCGCACAGATCCCAAACACGCTGTCACCTCCACCACCAGACAAACTTGACACAGGGCTTAAGTTCGACAAATCCATGGCCATCGTCCTCGTGATCCTCATCGTTGTGTTCTTCGTCTTGGGCTTCATTTCCGTCTACACTCGTCAGTGTGCAGAGCGAGGGAGGCTCGACCTCGCAATCCCAATCGTCGGAAGCCACCGGAGACAGCGCGGTCTTAACCCGGAAATCATCGAAACGTTCCCCACCTTCGTCTACTCCACCGTGAAGGGGCTGAAAATTGGGAGAGCCACGCTAGAATGCGCCGTGTGCCTCAACGAATTCCAAGATAACGAAACGCTGCGTTTGATCCCAAAGTGTAGCCACGTGTTCCATCCTGAATGCATCGACGCTTGGCTTACCAATCACTCCACTTGTCCAGTTTGCCGAGCCAACCTCGTTCCACGACCTGGAGATTCTTCCTTTATCGCTATTCAAATTCCGGATCCTGACGGTTACAGATCCAGATCCGATTCAGATGACCCGACCCGGACCGACACACGTGCCAGTCCCAGTCCCAGTCCGCAAAGTAACATCAGATCACCAGAGATGGGAAATGTTTCTCTTTCTCCCAAGGTGAATATTTCAGTTTCAGTTACTCCTAACCGTCCACCACGGTCAAGGTCAACGGGGTTTAGATTCGCGAATTGGTTTCCAAGGTCTCATTCGACAGGTCACTCGCTGGTTCAAGCGGGTGAGAGTCACGAGAGGTTTACCCTGAGATTACCGGAGGAAGTGCGGAACCGGTTGGTGAACTCAACGCTAAGCCGCACGAGGAGTTCTGGTGTCACATTTACACGAGAGAGCAGTGGGAGAAGGAGTTACAGGACGAGGAGCGTGGGTAGCAGTGCTGCTGGGAGGAGCTATGAGCGGTTTGACCGGCCGGACCGGTGGGGTTTTTCTTGGACACCACCGTTTGTGGGTAGAGCCGGTTCGACCAAGTCGCCGAAGGGTTCGAGGGAGTCCAATAAGGCAATGGATGACGTGGGAGAACGATCTTCGGATCGCCTATTTGCAGGCAGGGAGGATAAATTAGAAGGGTGA 1170 0.5316 MTTLTLKLHSNFQHGLFLLLVLLIQAPPPATAQIPNTLSPPPPDKLDTGLKFDKSMAIVLVILIVVFFVLGFISVYTRQCAERGRLDLAIPIVGSHRRQRGLNPEIIETFPTFVYSTVKGLKIGRATLECAVCLNEFQDNETLRLIPKCSHVFHPECIDAWLTNHSTCPVCRANLVPRPGDSSFIAIQIPDPDGYRSRSDSDDPTRTDTRASPSPSPQSNIRSPEMGNVSLSPKVNISVSVTPNRPPRSRSTGFRFANWFPRSHSTGHSLVQAGESHERFTLRLPEEVRNRLVNSTLSRTRSSGVTFTRESSGRRSYRTRSVGSSAAGRSYERFDRPDRWGFSWTPPFVGRAGSTKSPKGSRESNKAMDDVGERSSDRLFAGREDKLEG. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01682 389 MobiDBLite consensus disorder prediction 299 389 - -
Seca4g01682 389 CDD RING-H2_EL5-like 129 172 - -
Seca4g01682 389 FunFam E3 ubiquitin-protein ligase ATL6 92 178 - -
Seca4g01682 389 MobiDBLite consensus disorder prediction 208 251 - -
Seca4g01682 389 SMART ring_2 130 171 IPR001841 -
Seca4g01682 389 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Seca4g01682 389 Pfam Ring finger domain 129 172 IPR001841 -
Seca4g01682 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 177 IPR013083 -
Seca4g01682 389 MobiDBLite consensus disorder prediction 362 389 - -
Seca4g01682 389 MobiDBLite consensus disorder prediction 183 251 - -
Seca4g01682 389 MobiDBLite consensus disorder prediction 299 326 - -
Seca4g01682 389 PANTHER RING FINGER DOMAIN-CONTAINING 39 180 - -
Seca4g01682 389 SUPERFAMILY RING/U-box 124 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01682 Seca-Chr4 27345278 27346447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01682 9 378 Rapid Response to Elicitors AT3G05200 37.468 2.56e-63 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01682 K10664 - gmx:100807828 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01682 4 27345278 27346447 Seca4g01682 4 27345278 27346447 ECH