Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01641 ATGGCGGCCGTGAATTCACAACCTCTGCAGTTCGAGGACCCTGCGATACCGGTCGACGACGACGACGACGACGACGACGTTGGTGGCGTTGGTGATGCTATGGTTGAGTTGGAGGAAGAAAATGTCAATTCAGTGAGCGTTGCAGCAACTGCGAATCATGATGCAGTTGTTTTGCCTTCGCGTACTAGTGAGCTCACTCTTTCTTTTGAGGGTGAGGTTTACGTCTTTCCCGCTGTCACACCTCAGAAGGTGCAAGCTGTTTTGCTGCTTTTGGGAGGACGTGATGTGCAGGCAAGCGTGCCTACAGTTGAATTACCATTTGACCAAAAGAACAGGGGTATGGGTGACACTCCAAAGCGTTCAAATCTTTCACGAAGAATAGCCTCCTTGGTCAGGTTTCGTGAAAAACGCAAAGAAAGATGTTTTGACAAGAAAATTAGGTACACTGTGAGAAAAGAGGTGGCACAGAGGATGCATCGGAAGAATGGGCAGTTTGCATCCTTGAAGGAAAGCCCAGGTTCATCTAGTTGGGATTCTGCACGGAGTTCTGGTCAAGATGGCACTCCTCATTCTGAATCTATACGTAGATGTCAACATTGTGGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGTGGGCCAGCTGGACCAAGGACATTATGTAATGCCTGTGGCCTTATGTGGGCTAACAAGGTTAGTCATTATGCTAGTAAGTATGCTTATGATGAAATGCTCAGTTTTAACTACTGCTCTTATGGTACTATTGTGACTAGTTCTACTAAACCACTGTCATTTATTATCTACTATGGTGCCATTTCATTGTTCCTGATTGGGACTATGGTCCCTATGGGTACACTCAGAGATCTCAGTAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGATCTGGACACTCCTGTTGATGTCAAGCCTACTGTTCTTGAAGGGGAATTGCCTGGCATCCAAGAACAGCGAGGTATTTCTGATGATCCTTCCAAGGCCAGTACTGCTGAAGGCTCAAATAGACATGCTGTAAACCCCAGTGACGAGGAATTGCATGAATCTGCAGAACACTTTACAAACACACTGCCACTGGAAATTGGTCATTCTTCAGCAAACGATGATGAGCAGGAACCTCTGGTTGAGCTTTCTAATCCTTCAGATACAGATATTGTCATTCCTGGAAACTTTGATTAA 1197 0.4545 MAAVNSQPLQFEDPAIPVDDDDDDDDVGGVGDAMVELEEENVNSVSVAATANHDAVVLPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVQASVPTVELPFDQKNRGMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSSWDSARSSGQDGTPHSESIRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKVSHYASKYAYDEMLSFNYCSYGTIVTSSTKPLSFIIYYGAISLFLIGTMVPMGTLRDLSKGGRNLSVEQSDLDTPVDVKPTVLEGELPGIQEQRGISDDPSKASTAEGSNRHAVNPSDEELHESAEHFTNTLPLEIGHSSANDDEQEPLVELSNPSDTDIVIPGNFD. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01641 398 Pfam tify domain 60 92 IPR010399 -
Seca4g01641 398 SMART GATA_3 191 243 IPR000679 GO:0006355|GO:0043565
Seca4g01641 398 MobiDBLite consensus disorder prediction 167 191 - -
Seca4g01641 398 Pfam CCT motif 126 167 IPR010402 GO:0005515
Seca4g01641 398 Gene3D - 191 238 IPR013088 GO:0006355|GO:0008270
Seca4g01641 398 Pfam GATA zinc finger 197 231 IPR000679 GO:0006355|GO:0043565
Seca4g01641 398 MobiDBLite consensus disorder prediction 317 398 - -
Seca4g01641 398 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 235 - -
Seca4g01641 398 MobiDBLite consensus disorder prediction 159 196 - -
Seca4g01641 398 ProSitePatterns GATA-type zinc finger domain. 197 224 IPR000679 GO:0006355|GO:0043565
Seca4g01641 398 ProSiteProfiles Tify domain profile. 58 93 IPR010399 -
Seca4g01641 398 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g01641 398 PANTHER GATA TRANSCRIPTION FACTOR 28 21 391 IPR045280 GO:0006355
Seca4g01641 398 ProSiteProfiles CCT domain profile. 126 168 IPR010402 GO:0005515
Seca4g01641 398 CDD ZnF_GATA 196 231 IPR000679 GO:0006355|GO:0043565
Seca4g01641 398 SMART tify_2 58 93 IPR010399 -
Seca4g01641 398 MobiDBLite consensus disorder prediction 328 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01641 Seca-Chr4 26658034 26665667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01641 9 231 Tify Gene Family AT1G51600 51.029 9.20e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca4g01641 CCT 1.6e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01641 - - gmx:100801328 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01641 4 26658034 26665667 Seca4g01641 4 26658034 26665667 ECH
Seca4g01641 4 26658034 26665667 Seca4g01640 4 26643820 26649285 PCT