Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01640 ATGTACGACCCTATGAACATGCCCAACCAGATCGAAGACAACGACGGCGACAGTCACATTCACTACGATTCGCATGCCCTCGAAGACGGTAGCGGCGGAGTCGAAGATGTTTCCACCGATACTGTCTATGTTTCCGGTGGTGGAGGCCCTGACATGTCTATTCAACGCTGCGATGATTCTAGCCAGCTCACGCTTTCGTTTCGTGGCCAAGTTTATGTATTTGATTCTGTTACACCTGATAAGGTTCAAGCGGTGTTGTTACTGTTAGGAGGATGTGAATTATCTTCAGGTTCGCAATGTTTGGAGATATCACCTCAAAATCAGAGGGATGCAGCGGAATATCCTCCTAAATGTAGCCAACCACAGCGTGCTGCCTCGTTAATTAGGTTCCATCAGAAGAGGAAAGAGCGGTGTTTTGATAAGAAAGTTAGATATAGTGTGCGTCAAGAAGTTGCACTCAGGATGCAACGTAATAAGGGTCAGTTTACATCATCTAAGAAACAAGATGGAGCCAATAGTTGGGGCGCAGATCAAGAGTCAGTGCAGGATGCTGTTCAATCAGAAACTTCATGCACACATTGTGGAATAAGTTCCAAATCCACCCCAATGATGCGAAGGGGGCCATCTGGTCCACGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGTAAGTATTTCTCCATATGGTTTGCTTTGA 705 0.461 MYDPMNMPNQIEDNDGDSHIHYDSHALEDGSGGVEDVSTDTVYVSGGGGPDMSIQRCDDSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSGSQCLEISPQNQRDAAEYPPKCSQPQRAASLIRFHQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKQDGANSWGADQESVQDAVQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRVSISPYGLL. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01640 234 Gene3D - 185 231 IPR013088 GO:0006355|GO:0008270
Seca4g01640 234 SMART GATA_3 185 231 IPR000679 GO:0006355|GO:0043565
Seca4g01640 234 PANTHER GATA TRANSCRIPTION FACTOR 28 4 225 IPR045280 GO:0006355
Seca4g01640 234 MobiDBLite consensus disorder prediction 158 179 - -
Seca4g01640 234 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 186 230 - -
Seca4g01640 234 CDD ZnF_GATA 190 225 IPR000679 GO:0006355|GO:0043565
Seca4g01640 234 Pfam tify domain 60 90 IPR010399 -
Seca4g01640 234 ProSiteProfiles Tify domain profile. 56 91 IPR010399 -
Seca4g01640 234 Pfam CCT motif 123 165 IPR010402 GO:0005515
Seca4g01640 234 SMART tify_2 56 91 IPR010399 -
Seca4g01640 234 Pfam GATA zinc finger 191 224 IPR000679 GO:0006355|GO:0043565
Seca4g01640 234 ProSiteProfiles CCT domain profile. 123 165 IPR010402 GO:0005515
Seca4g01640 234 ProSiteProfiles GATA-type zinc finger domain profile. 185 221 IPR000679 GO:0006355|GO:0043565
Seca4g01640 234 ProSitePatterns GATA-type zinc finger domain. 191 218 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01640 Seca-Chr4 26643820 26649285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01640 60 228 Tify Gene Family AT4G24470 67.836 1.08e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca4g01640 CCT 2.5e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01640 - - lja:Lj0g3v0164269.1 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01641 4 26658034 26665667 Seca4g01640 4 26643820 26649285 PCT