Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01635 ATGCCTCACAGAGCCACTTACTTTTTCCCGCGTCAGTTTCCTGAGCGTGGAGGGTTAGATGAATCATCCAAAAAGCTATTAGATCACGAGAAGGAGAAAATCGTCAACTCAATCAAATCGGATACCTTTGGCGTTGAAAGCGACGTTCCTAAAAAGTCACTTTCGTCGTCAACTACCACTGCTCCAACCAAACACGACGTCGTTCTCTCCTCTGCTAAGCACTCCGCTGTTTCCGACCTTTTCGCCGCCGGTGACAAGTACCGAATCAAACACAAGCAAATTGCCGCTTTCTGCGATTGGTTAATCGACAAAAAAGGAGATCACTCCGGTCACCACCTCCGCCGCTTGTCCACAACCTCCGAGGAGGACCGCGACCTTCTTCTACCTCCGCCGGAGACCGTCGTCAAGGACACTGCCGTCGACCGAAGTTTTGACCGGCAGGTTTCGCTTCCGAGGTTTTCGAGCGGGAGCAGCTATGCTGGGAGCTTGTTTTCGGGAACGACGTTGGATGGCAATTTTTCCAGCGACATTAAGGAGGAAACGCCGTCGTCTCGGGTTTCCACCATTACCACCACCACTCCAGCGAGGAGACAGAAGGAGGAAGAAGAAAACAAAGACACATTGGCGAAGAAGTCCGAAGAAAGCTACATCTTGCAACTTACGCTGGCAAAGAGGCTCACTAATTTGGCTAGTCTCGTGACTGAGCCTGTTCTTGCACCTTGCACTGAAACTTGGGATGCTGAATCTGTTTCTTATCGTTTATGGGTGAGTGGGTGCTTGTCATACTCTGATAAGATATCTGATGGTTTTTATAATATATTGGGGGTGAATCCGTATCTGTGGGTGATGTGCAATGATGTGGAGGAAGGTCGGAGGATACCTACTTTGATGGCGCTTAAAGCTATTGAACCCAGCGAGACATCTATGGAGGTGGTTCTTGTTGATAGGCATGAGGACTCTCGCCTGAAGCTGCTTCATGATAAGGCACAAGAGTTGTATTGTGCTTCTGAGAACACCTTGGTGTTGGTGGAACAACTAGGAAAACTTGTTGCCATATATATGGGGGGCACGTACCCGGTGGAACAAGGAGATCTCCACAAGCGCTGGAAATTGGTTAGTAAAAAGTTGAGGAATTTTCAAAAGTGTGTTGTGCTTCCCATTGGCAGCCTATCTACTGGGCTTTGTAGGCATCGGGCAATTCTCTTCAAGAGATTGGCAGATTACATAGGTTTGCCTTGTCGCATAGCTCGTGGTTGCAAGTATTGTGTTGCAGATCACAGATCCTCTTGCCTAGTCAAGATTAAAGATGACAAGCAGCTCTCAAGGGAATACGTAGTTGACCTAGTTGGGGAACCAGGAAATATCCATGGGCCAGATTCCTCAATCAATGGAGCATATGTATCTTCGATGCCTTCCCCATTTCAAATTTCTCATTTAAAAGAATTACAATCACCTTATATGGATGGTGCAGCATGTTCTCAATCTAAAAGTTTCGATCGTAATTCTGTTAATCCTGAAAGTCATCCATATTCAGGCTGTGGACAGAATGATCTACAAGTTAAAGAAACTGATTTGCTAAAACATCATAAGGGCTCCATTTATGCTTCAGTTGATCAAACCTGTGAAGGAACAGAGCCACCTCTAAATCCTTTTGGTTTAAAAGGGAATGAAGACGAATGTGCGGTTTTAAGTTCAATTTTGCCTACCATTCATGAAGATGTTTCTAAAGCTCTTCATCCTGCCAGTGAAGCATCATTGCATGAATATCCAATAGTTAGTGAAGATGCAGTTGTAGTACAAGAAACTTCCAACAATGAGATCATTGTAACTGGAAGTTCAGTGGTAAATAGTACTTTCAAGCAATGTATACTTAGTTCATCCATCCAGTCAGAACTGAAACAGCTAGACAACAAAATTGAAAATCAGGGCTGTTTACCAGCTGGGAGTGTTCCAAGATATGTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAAATATCATGGGATGATTTACGAATTAAAGAGCGTGTCGGTGCTGGCTCATTTGGGACAGTGCACCGTGCTGAATGGCATGGATCAGATGTTGCAGTCAAGGTTTTAACGGTTCAGGATTTCCATGATGATCAATTGAAGGAGTTTCTGAGAGAGGTTGCAATAATGAAACGTGTTCGCCATCCAAATGTGGTGCTCTTCATGGGTGCAGTTACAAAACGACCCCATCTATCAATAGTGACAGAGTATTTACCTAGGGGTAGTTTATACCGCCTGATACATAGGCCAGCATCTGGTGAAATTATGGATAATAGGAGAAGATTACGGATGGCTCTGGATGTGGCTAAAGGGATCAATTATCTCCATTGTCTGAAACCTCCAATTGTGCACTGGGATCTCAAGTCCCCAAACTTGTTAGTGGACAAAAATTGGACTGTGAAGGTTTGTGACTTTGGGTTGTCCAGATTTAAGGCAAACACTTTCATACCATCAAAATCTGTTGCTGGAACACCTGAGTGGATGGCTCCAGAATTTCTCCGTGGAGAACCTTCAAATGAGAAATCTGACGTATACAGTTTTGGAGTTATCTTATGGGAACTTGTAACCATGCAACAACCATGGAGTGGACTTAGCCCTGCCCAGTAG 2640 0.4462 MPHRATYFFPRQFPERGGLDESSKKLLDHEKEKIVNSIKSDTFGVESDVPKKSLSSSTTTAPTKHDVVLSSAKHSAVSDLFAAGDKYRIKHKQIAAFCDWLIDKKGDHSGHHLRRLSTTSEEDRDLLLPPPETVVKDTAVDRSFDRQVSLPRFSSGSSYAGSLFSGTTLDGNFSSDIKEETPSSRVSTITTTTPARRQKEEEENKDTLAKKSEESYILQLTLAKRLTNLASLVTEPVLAPCTETWDAESVSYRLWVSGCLSYSDKISDGFYNILGVNPYLWVMCNDVEEGRRIPTLMALKAIEPSETSMEVVLVDRHEDSRLKLLHDKAQELYCASENTLVLVEQLGKLVAIYMGGTYPVEQGDLHKRWKLVSKKLRNFQKCVVLPIGSLSTGLCRHRAILFKRLADYIGLPCRIARGCKYCVADHRSSCLVKIKDDKQLSREYVVDLVGEPGNIHGPDSSINGAYVSSMPSPFQISHLKELQSPYMDGAACSQSKSFDRNSVNPESHPYSGCGQNDLQVKETDLLKHHKGSIYASVDQTCEGTEPPLNPFGLKGNEDECAVLSSILPTIHEDVSKALHPASEASLHEYPIVSEDAVVVQETSNNEIIVTGSSVVNSTFKQCILSSSIQSELKQLDNKIENQGCLPAGSVPRYVNLEPSLAMDWLEISWDDLRIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPASGEIMDNRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPAQ. 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01635 879 Pfam Ethylene-responsive protein kinase Le-CTR1 247 455 - -
Seca4g01635 879 CDD STKc_MAP3K-like 678 879 - -
Seca4g01635 879 ProSitePatterns Protein kinases ATP-binding region signature. 678 699 IPR017441 GO:0005524
Seca4g01635 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Seca4g01635 879 SUPERFAMILY Protein kinase-like (PK-like) 652 878 IPR011009 -
Seca4g01635 879 MobiDBLite consensus disorder prediction 174 194 - -
Seca4g01635 879 Pfam Protein tyrosine and serine/threonine kinase 672 877 IPR001245 GO:0004672|GO:0006468
Seca4g01635 879 ProSiteProfiles Protein kinase domain profile. 672 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01635 879 Gene3D Transferase(Phosphotransferase) domain 1 751 879 - -
Seca4g01635 879 SMART serkin_6 672 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01635 879 MobiDBLite consensus disorder prediction 174 207 - -
Seca4g01635 879 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 208 876 - -
Seca4g01635 879 Gene3D Phosphorylase Kinase; domain 1 665 749 - -
Seca4g01635 879 FunFam Serine/threonine-protein kinase isoform 1 662 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01635 Seca-Chr4 26499945 26509319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01635 1 879 MAP Kinase Kinase Kinase AT4G24480 56.446 0.0 986
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Seca4g01635 EDR1 1.2e-76 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01635 - - gmx:100808435 1453.34