Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01627 ATGCCAATGCCAGAAAAAAAGTGCAAGAAGGTCTCCTTCTCTGAAGAAGACGCTGCTACTCTCACACAGAGATATGATGCAACCACTATATTAACGGTACTTCAGGAGATAGCGCATTATCCTCATTCCAAGATTGATTGGAATGAGTTGGTCAAGAAAACCTCCACTGGGATTTCTAATGCCAGGGAATATCAGATGCTCTGGCGTCACTTGGCCTACCGTGATGCCTTGCCTGAAAATTTAGAAGATGGGGCTGAACCTATGTCTTACTTCCAGGACGATGATAGTGACTTAGACTGTGAGCTGGAAGCATTACCCCCAGTAAGTGCAGAATCTGCCTCGGAGGCTGCAGCATGTGTGAAGGTAATGATTGCTTCCCGTACGCTAAGTGAATCTACCCCTAGTAGCTCAACAATTGAGGCTCCATTGACTATAAATGTTCCAGTTCGCCATTCATCTAGAACTCCTAATGAAAGTTCACAGCCCTCTAATTCGATGCAAGGGACAAGCATTATTTTTCCAGTCACTGTTCAGAGACAGACACTGCCAACTGTATCATCAACAGATGGTATAGAAACCAAGGGATTAGTTGGTGGTAACATGGCTTCCAAAAGGAGGAGAAAAGCATGGTCAGAGGAAGAGGACATGCAGCTTCGAGCTGCTGTTCAGAGATGGGGTGAAGGGAATTGGGCAACCATGGCAAAAGGAGACAACTTTCCTATTAAGAGAAGTCCAACACAGTTGGCTCAGAGGTGGAGCATTTTGCGAAAGAAAGATGGCAGTGCCAATTCAGGAACCATCTTGACCAGCACACAGTATACTACTGCTGAACAGCTGGCAACTCGTCACTCTTTATCTTTAGCCCTTGATATGCCATTCAAAAAGTTAACTGCTCCTGGGATGATTGATCTCAGGACATCCATATCAATTAAAAATCAAATGCAGCCTTGTAATAATACAGATGTTTCTAAAGTTAACCGTAGTAGTGTACCTCCTCAACATCCATCTCAACAAGCCTTGTTGGGATCTTGTGCTTCCTCTGCAAAATCCAAATTAGCCTCTGAAAAAACAGTCTTGAAGTGTAACTTAATTCCAGATCCTGAGTTAAAATCTACCACAGTTGATTCTAGGTCACAAATTGCTTCACAATCAAATATCATATCACAATTTAAGGTTGCTCAATTAAGAAATACGGTAGGCACTATCCCTGCAGGTGGCTCGTTGACAACGACATCCATTTCTGCTGGTTTGCCTTCTAACCTAAAGGATAAGCGTGTTAGCTCTGTTGTTGATGAAGTTATGTTGAAGCAAGAAGTTAATCCCATACAAGAATTTAGAGATTCTGACCCTGGCTCCATAACAAAAGAGAAGGTACAAGAAAGTGAAGCCCCTAAATTTACTACTCAGAGCCAGGTTGATAACAAACCGGATAAGGGGACACTAGATTCAGATAAAACTATTTCAGAACATAAAACTATCTCACAAAATCCAGGAGGGAGTGAAGAGAAAGAAAGTGGTAAGAATTCAAATTTTACTCTCAAGATAGAGACCACTAAGAATGAGAGTAGCAACCTCGATAAGGAGAGTCAAGATTTAGACCAAGAGAAGAGGACAAGTTCAATTAATGGAAGTCTTACAATCAAAACATGA 1650 0.4188 MPMPEKKCKKVSFSEEDAATLTQRYDATTILTVLQEIAHYPHSKIDWNELVKKTSTGISNAREYQMLWRHLAYRDALPENLEDGAEPMSYFQDDDSDLDCELEALPPVSAESASEAAACVKVMIASRTLSESTPSSSTIEAPLTINVPVRHSSRTPNESSQPSNSMQGTSIIFPVTVQRQTLPTVSSTDGIETKGLVGGNMASKRRRKAWSEEEDMQLRAAVQRWGEGNWATMAKGDNFPIKRSPTQLAQRWSILRKKDGSANSGTILTSTQYTTAEQLATRHSLSLALDMPFKKLTAPGMIDLRTSISIKNQMQPCNNTDVSKVNRSSVPPQHPSQQALLGSCASSAKSKLASEKTVLKCNLIPDPELKSTTVDSRSQIASQSNIISQFKVAQLRNTVGTIPAGGSLTTTSISAGLPSNLKDKRVSSVVDEVMLKQEVNPIQEFRDSDPGSITKEKVQESEAPKFTTQSQVDNKPDKGTLDSDKTISEHKTISQNPGGSEEKESGKNSNFTLKIETTKNESSNLDKESQDLDQEKRTSSINGSLTIKT. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01627 549 Coils Coil 515 535 - -
Seca4g01627 549 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Seca4g01627 549 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 260 IPR017930 -
Seca4g01627 549 MobiDBLite consensus disorder prediction 520 535 - -
Seca4g01627 549 CDD SANT_TRF 208 257 - -
Seca4g01627 549 Gene3D - 200 262 - -
Seca4g01627 549 SMART sant 206 258 IPR001005 -
Seca4g01627 549 ProSiteProfiles Myb-like domain profile. 202 256 IPR001005 -
Seca4g01627 549 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 4 422 - -
Seca4g01627 549 MobiDBLite consensus disorder prediction 441 549 - -
Seca4g01627 549 MobiDBLite consensus disorder prediction 490 519 - -
Seca4g01627 549 Pfam Myb-like DNA-binding domain 207 252 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01627 Seca-Chr4 26349391 26356037 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g01627 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01627 - - gsj:114409223 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01627 4 26349391 26356037 Seca4g01627 4 26349391 26356037 ECH
Seca4g01627 4 26349391 26356037 Seca4g01627 4 26349391 26356037 PCT