Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01616 ATGGTCTACCCAGGTTCAATGCAATTGTCTCGTGACGTTAGGCTCAACAGTAATAACAGATTCCGTAGTCTCCATCATAATCCGATGGGGGTTGGTCGGTTACATTTGGTCACCATAAATCTTTTACCACGCAGTTTGAATCAAGATTCTTTGGCACTCCATCTTTTGAGTAGAGTACATGCCCCAGTAAGGCATGTGCCTTCAAGATGTAATGTTTTTGTGTGTCGGTCTGTCATGATACCAGGTGGTGGGAGTGGGACTCCACTCATAAAATCTGCTAGTGTTTTTTTGACAAGGTCATGTGATGCTTTACTGGGAAGCCCTGTTTTGCTTCGATTGATCCCAGCCCTTGGTATTATTGCCTTTGCTGTTTGTGGTCTTGAGCCACTCCTTCGTCTCAGCAGGATCCTATTTCTTCAAAGGACTGATAGTAGCTGGAAGAAAAGTAGTTCACGATATATTATGACATCTTATTTTCAACCATTACTGTTGTGGACTGGGGCAATGCTCATATGCAGGGCATTAGATCCACTAGTCCTACCATCTGAGACTAGCCAGGCTGTGAAGCAACGGCTGCTGAATTTTGTGAGATCCTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGCTTAATTCAACAAGCACAAAAATTCTTTCTGGAGGCAAATGACTCCAGTGATACAAGAAATATGGGTCTGGATTTTGCTGGGAAAGCAATATATACTGCTGTATGGGTTGCTGCTGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGTTAACTGCTGGTGGTTTAGGAACAGTATTGCTCACTCTTGCAGGTCGTGAGATATTTACGAACTTCCTTTCAAGTATAATGATCCATGCAACTCGGCCATTCATTGTGAATGAGTGGATTCAAACGAAGATTGAAGGATATGAGGTTTCTGGTACAGTTGAGCATGTAGGCTGGTGGTCACCAACCATTGTGAGAGGTGATGATCGTGAGGCAGTTCATATCCCTAATCACAAGTTCACTGTAAATGTTGTGAGAAATCTGACTCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATTAGTCACTTGGATGTTAACAAAATTAATAGTATTGTAGCTGATATGCGCAAGGTTTTGGCTAAGAATCCTCAAGTAGAGCAGCAAAAATTGCACAGAAGGGTCTTTTTGGAGAATGTCAATCCTGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTCAAAACTTCACATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTTGTCAGCCATCATCGAGCTCGCTTAGCCACTCCCATCCGTACAGTTCAGAAAATATATGGTGAGGCTGACTCAGAAAATATACCCTTTGGGGACACCATTTTCACTCGATCCAGAGCAGCAGTAAATCGCCCATTCCTATTGATAGAACCACCGTATAAAGTTAATGGTGAAGATAAAGTTAAGCCTTCAACCCGTTCAACTCGTGCAAATGAGGAAAAAGATGCCAAGGTTGATGAAACTGTGGCATCTGACCCCAAAGGAGACGAGAATTTTGCAGTGACATCAAGCTCCCCACCAGGTGTAAGCTCCAAGGATAAATCCAAGTCAAATTCTGAGGCACAAATCCAGAGTATGGGTTCTGATAGTTCAGTTGAGAAGACCTCCAAAACCATGCAGCCTAAAAAGGAAAGTGCAGTAGAGGTAGGAAAGGGAAGTACAGTTCCTGCATCTAAAAACCTTGCACACAGTGCTGTGCCTGAAGTTCCTCCTATTACTTCCCATGAGTCTGGCAAGGGAGAAACTGCTTCTGCTACTACTTCACAGTCAAAGCAAGATGAAGAGAAATCTGCTGTCTCTTCATCAACTGTCAGGTCTTCCTTGGAAGAGAACATTCTTCTTGGGGTTGCCCTGGAAGGCTCAAAACGAACTCTTCCAATTGAGGAAGAAATGACTCCACCATCTCCTAACCCTGCAGAGTCACAAGGATTTGCTGTCCAACGGAATGGGAGTGGACCTCCTGCTAACAAGGATAAGAAGGATGTCCCCATGTCCTCATTTCCAACTACTAAGCAGAATGACTAG 2124 0.4303 MVYPGSMQLSRDVRLNSNNRFRSLHHNPMGVGRLHLVTINLLPRSLNQDSLALHLLSRVHAPVRHVPSRCNVFVCRSVMIPGGGSGTPLIKSASVFLTRSCDALLGSPVLLRLIPALGIIAFAVCGLEPLLRLSRILFLQRTDSSWKKSSSRYIMTSYFQPLLLWTGAMLICRALDPLVLPSETSQAVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEANDSSDTRNMGLDFAGKAIYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYIAISHLDVNKINSIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYGEADSENIPFGDTIFTRSRAAVNRPFLLIEPPYKVNGEDKVKPSTRSTRANEEKDAKVDETVASDPKGDENFAVTSSSPPGVSSKDKSKSNSEAQIQSMGSDSSVEKTSKTMQPKKESAVEVGKGSTVPASKNLAHSAVPEVPPITSHESGKGETASATTSQSKQDEEKSAVSSSTVRSSLEENILLGVALEGSKRTLPIEEEMTPPSPNPAESQGFAVQRNGSGPPANKDKKDVPMSSFPTTKQND. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01616 707 Pfam Mechanosensitive ion channel 239 446 IPR006685 GO:0016020|GO:0055085
Seca4g01616 707 MobiDBLite consensus disorder prediction 610 642 - -
Seca4g01616 707 Gene3D - 297 350 IPR023408 -
Seca4g01616 707 MobiDBLite consensus disorder prediction 497 707 - -
Seca4g01616 707 MobiDBLite consensus disorder prediction 497 526 - -
Seca4g01616 707 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Seca4g01616 707 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 2 696 IPR045042 -
Seca4g01616 707 MobiDBLite consensus disorder prediction 668 682 - -
Seca4g01616 707 MobiDBLite consensus disorder prediction 530 568 - -
Seca4g01616 707 Gene3D - 196 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01616 Seca-Chr4 26229105 26237377 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01616 1 663 Mechanosensitive Ion Channel Family AT1G58200 54.911 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01616 K22047 - gmx:100796022 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01616 4 26229105 26237377 Seca4g01616 4 26229105 26237377 ECH