Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01614 ATGATGTTGTGCTCATTGCATAACCTTGGACTTCAGTTCAATTCAACAATGGCCTATTCGGGTTCAATACGATTGTTTCACGACATCAGGCTATACACTAATAATGGAGGCTGTAGTTTTTGTCATAAGTCTATGCGTGGTGATTTTGTCATCATCAACCTTTCACCACATGGTTTGAGGCAGGGTTCTTCAGCACTCCTTCTTTCCAGATTACATGGCCCACTTAAGCCTCTACCTTCTAGATGTAATGTTTTGTTTTGCCGGTCTGCCCTAACACCAGCTGGAGGGTGTGAGGCCCCACTTGTGAAAGTGGCTACTGTTTCTTTGTCAAGGTCATATAATGCTATATCAGTAAGACCAATTGTGCTTCGATTGATCCCTGCACTTGGTATCATTGGCTTTGCTGTCTTTGGTCTTGAGCCGCTTCTGCGCTTGAGTAGGGTTGTATTTCTCCAAGAAAGGAGTGATAGAAGTTGGAAGAAAAGTAATTCACGTTATATTATGACATCTTATTTTCAACCCTTGCTGCTCTGGACTGGGATAATGCTCATATGCAGAGATTTAGATCCACTAGTCCTACAATCAGAAACCAGTCAGACTATGAAGCAACGGCTGCTGAGTTTTGTAAGATCTTTGTCAACCGTGCTTACATTTGCTTACTGTTCTTCAAGCTTAACTCGACAAGCACAAAAATTCTGTATGGAGACAAATGACTCCAGTGATGAAAGAAATATGAGCATTAATCTTATTGGAAAAGCTGTGTACACTGCAATATGGGTTGCTGCTGTATCGTTATTCATGGAGTTGATGGGTTTCTCCACCCAGAAGTTGTTGACTGCTGGTGGTTTGGGCACAGTGTTGCTTTCCCTTGCAGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGTAATGATTCATGCAACACGTCCATTTGTTGTGAATGAGCGGATTCAAACAAAGATCAAAGGATATGAGGTTTCTGGTAAAGTTGAGCATGTAGGCTGGTGGTCACCAACAATAGTTAGAGGTGCTGATTGTGAAGCAGTTCATATTCCTAATCACAAGTTGAGTGTAAATGTTGTGAAGAATCTTAGTAAGAAATCTCATTGGCGCATCAAGACTCACCTTGCTATTAGTCACTTGGATATTAGCAAGGTTAATAGTATTATAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAGAAAAAGTTGCACAGAAGGGTTTTTCTGGAGGATATTAATCCACAAAATCAGGCTCTTATGATATTAGTGTCTTGCTTTGTTAAAACTTCACATTCGGAAGAGTACCTCCGTGTTAAGGAGGCAATTCTCTTGGATCTTCTTAGAATCATCAGTCATCATGGAGCTCGGCTAGCCATGCCTATCCGCACAGTTCAGAAGATGTGCAGTGATGCTGATTTAGAAAACGATCCATTTGATGACACCATTTCCACACGTTCCAGAGCAAAGACAAACCGTCCATTCCCGCGTGTAGATCCACCTTATAAAGGTAATCCTTCAACTCATTCAACTATTACAAATGAGGATGTAGACTCCAAGGATAAATTTAAGTGA 1587 0.4108 MMLCSLHNLGLQFNSTMAYSGSIRLFHDIRLYTNNGGCSFCHKSMRGDFVIINLSPHGLRQGSSALLLSRLHGPLKPLPSRCNVLFCRSALTPAGGCEAPLVKVATVSLSRSYNAISVRPIVLRLIPALGIIGFAVFGLEPLLRLSRVVFLQERSDRSWKKSNSRYIMTSYFQPLLLWTGIMLICRDLDPLVLQSETSQTMKQRLLSFVRSLSTVLTFAYCSSSLTRQAQKFCMETNDSSDERNMSINLIGKAVYTAIWVAAVSLFMELMGFSTQKLLTAGGLGTVLLSLAGREIFTNFLSSVMIHATRPFVVNERIQTKIKGYEVSGKVEHVGWWSPTIVRGADCEAVHIPNHKLSVNVVKNLSKKSHWRIKTHLAISHLDISKVNSIIADMRKVLAKNPQVEQKKLHRRVFLEDINPQNQALMILVSCFVKTSHSEEYLRVKEAILLDLLRIISHHGARLAMPIRTVQKMCSDADLENDPFDDTISTRSRAKTNRPFPRVDPPYKGNPSTHSTITNEDVDSKDKFK. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01614 528 Gene3D - 310 363 IPR023408 -
Seca4g01614 528 Pfam Mechanosensitive ion channel 252 461 IPR006685 GO:0016020|GO:0055085
Seca4g01614 528 Gene3D - 206 309 - -
Seca4g01614 528 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 17 514 IPR045042 -
Seca4g01614 528 SUPERFAMILY Sm-like ribonucleoproteins 295 365 IPR010920 -
Seca4g01614 528 MobiDBLite consensus disorder prediction 480 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01614 Seca-Chr4 26208880 26218340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01614 22 514 Mechanosensitive Ion Channel Family AT1G58200 59.237 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01614 K22047 - gmx:100797302 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01614 4 26208880 26218340 Seca4g01614 4 26208880 26218340 ECH