Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01611 ATGAATGCCAGTAACAAAGTCGAAGCAGAGCGATTGCTTGATATGGGCGAGAAAATGCTGCAGACCCAGGATCTGAAAACTTCTAGGCAGTTAGCCATTTTGGCCCAGGAAGTCGAACCCCTTCACGAAGGTTCGGACCAACTCCTCGCCATCTTGGACGTTCTTGAGGCAGCAGAGAAATGCGTCAACGACAATACCCTTGACTGGTACTCTATTCTCCAGGTGGGCCGAGGCACTAATGACCTCGATCTCATTAAGAAACAGTATCGTAGGTTCGCCATTATCCTCCAGCCTAATAGGAACTTATTCTCCTTCGCCCATGAGGCCCTCAAGCTTGTTTCGGAAGCCTGGGCCGTGTTATCTGACCCAGCCCAAAAATCCATCTACGACAAGGCTTTCGGACGAACCAGTGGTGAATCTGGTGATGACACGTCTACCTTCTGGACTGCGTGCCCCTATTGTTACCGGTTGTATGAGTATCTTCGAGTTTACGAGGATTGTTGTTTGAAGTGCCAGAATTGTGAGAGATCGTTTCATGGGCTCTCGATTCCTGTTCTGCCGCCAATGGTACCAGGGAGAGAAGCTTATTATTGTACCTGGGGATTCCCTCCAACGGGTTCTGGGTCCAAAAAGTTAGAGAGTATTGGGAATGCTGGAGAACCGGGACCAATGCCGGCTGTTCAGAGTAATGAGGTTGCATCTGCTCCGCGGAAGCGAGGAAGGCCACGGAAGGTGGCTTGA 741 0.5047 MNASNKVEAERLLDMGEKMLQTQDLKTSRQLAILAQEVEPLHEGSDQLLAILDVLEAAEKCVNDNTLDWYSILQVGRGTNDLDLIKKQYRRFAIILQPNRNLFSFAHEALKLVSEAWAVLSDPAQKSIYDKAFGRTSGESGDDTSTFWTACPYCYRLYEYLRVYEDCCLKCQNCERSFHGLSIPVLPPMVPGREAYYCTWGFPPTGSGSKKLESIGNAGEPGPMPAVQSNEVASAPRKRGRPRKVA. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01611 246 SMART dnaj_3 67 125 IPR001623 -
Seca4g01611 246 Gene3D DnaJ domain 55 148 IPR036869 -
Seca4g01611 246 SUPERFAMILY Chaperone J-domain 64 132 IPR036869 -
Seca4g01611 246 CDD DnaJ 68 122 IPR001623 -
Seca4g01611 246 Pfam DnaJ domain 68 130 IPR001623 -
Seca4g01611 246 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 229 - -
Seca4g01611 246 MobiDBLite consensus disorder prediction 211 246 - -
Seca4g01611 246 ProSiteProfiles dnaJ domain profile. 68 133 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01611 Seca-Chr4 26173069 26173809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01611 2 236 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 46.124 1.48e-74 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01611 - - gmx:100802055 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01611 4 26173069 26173809 Seca4g01611 4 26173069 26173809 ECH
Seca4g01611 4 26173069 26173809 Seca4g01611 4 26173069 26173809 PCT