Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01609 ATGAAGAGGACGAAGATCAAGATTAAGAAAATCGACAACTTAACGGCGAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGCTCTTCAAGAAAGCTCAAGAACTTTCGGTGCTATGCGATGCTGAGGTTGGCCTCATTGTTTTCTCAGCTACCGGGAAGGTCTTTGATTATGGCAGCTCTAGGTACGGCATTGGGCTTTTACTTTTCTCTCAATAA 216 0.4491 MKRTKIKIKKIDNLTARQVTFSKRRRGLFKKAQELSVLCDAEVGLIVFSATGKVFDYGSSRYGIGLLLFSQ. 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01609 71 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca4g01609 71 SUPERFAMILY SRF-like 3 61 IPR036879 GO:0003677|GO:0046983
Seca4g01609 71 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 60 - -
Seca4g01609 71 Gene3D - 13 64 IPR036879 GO:0003677|GO:0046983
Seca4g01609 71 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca4g01609 71 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca4g01609 71 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca4g01609 71 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca4g01609 71 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca4g01609 71 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01609 Seca-Chr4 26145851 26146066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01609 1 61 MADS-box Gene Family AT4G24540 78.689 3.55e-30 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca4g01609 SRF-TF 4.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01609 - - gmx:100776749 108.227