Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01605 ATGTTTTCTCTCACCTTTCTCCTCCTTCTCTATATCAAACACTGCAACGGTGGGAATATCCACACTGGAGTGAACATTACTAGCGGTATTTCAGCTTCACGAGCGATTCCACCTTTAAGCGGGAGGAAAAACTCCGGCATAGACCGTTCCATAGTGGAATCGTTACCCATCTTCAGATTCGGATCACTGAGGGGCCAAAAAGACGGGCTTGATTGCGCGGTTTGTCTCAACAAGTTCGAGGCTGCAGAGGTTCTTCGATTGTTACCGAAATGCAAGCACGCGTTTCACGTCGAATGTGTGGATACATGGCTGGATGCACATTCCACTTGCCCTCTCTGTCGTTACAGAGTGGATCCAGAGGACATTCTGCTAGTGGACGATGCAAAGGTTTCACGCCAGAACAAGGAAGAGGAATGTTTGGACATTGAAAGAGGAAGGAGAAGCGAGATTGTAGAGTCTCGGCGGAGACATTCGTCGGTGGAGGAAAGGGAATCGGAACGGGAAAGGGAAAGGAGGAAAACGGCGTCGTTTAGGAGGTCATTGGATAGTGCGACATCGAGAAAGAAGAACGAGAGCGTGAGCGTTGGTATTGACATAGGGTGTTTTGTCCGTCCCAGAAAAGACGGGATGTTGTTGACACAAGACACGGAGAACAGAGACAGAGAAAGAGAAAGAGACAGGACAAGCGTGGAAAGGAGGTTGGAACACCGGATCATTGTCTCCCCATCACCACACACACACAATGGGCTCCACTTACATCACCAGCGGTGGAGCGATGTGCAACCTTCAGACCTCTTGTATCTAACGTCGGAGATGATAATCAGTGAGTCGCGCCGAGTGAACAACCACCGTAGTACGAATGATAATGACGTGGTTCAGGACAGTTGGAATGGCAGGGGAATAATAAATTCGAGAAGCGTGTCTGAGATCACGGGATTGAGCAGGTTCTCCAGCAATAATAATAACAACAACGGCACAGTCACGGAGAGAGAGGAAGGATTAGTCTCCAGGTGGTTGGCTTGGATTTCTCAGTCTCATTCACAACCAGCTGTACGGTAG 1059 0.4901 MFSLTFLLLLYIKHCNGGNIHTGVNITSGISASRAIPPLSGRKNSGIDRSIVESLPIFRFGSLRGQKDGLDCAVCLNKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVDDAKVSRQNKEEECLDIERGRRSEIVESRRRHSSVEERESERERERRKTASFRRSLDSATSRKKNESVSVGIDIGCFVRPRKDGMLLTQDTENRDRERERDRTSVERRLEHRIIVSPSPHTHNGLHLHHQRWSDVQPSDLLYLTSEMIISESRRVNNHRSTNDNDVVQDSWNGRGIINSRSVSEITGLSRFSSNNNNNNGTVTEREEGLVSRWLAWISQSHSQPAVR. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01605 352 MobiDBLite consensus disorder prediction 151 189 - -
Seca4g01605 352 FunFam RING-H2 finger protein ATL43 47 121 - -
Seca4g01605 352 Pfam Ring finger domain 71 114 IPR001841 -
Seca4g01605 352 SUPERFAMILY RING/U-box 53 119 - -
Seca4g01605 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 1 345 - -
Seca4g01605 352 MobiDBLite consensus disorder prediction 210 230 - -
Seca4g01605 352 MobiDBLite consensus disorder prediction 151 186 - -
Seca4g01605 352 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Seca4g01605 352 CDD RING-H2_EL5-like 71 114 - -
Seca4g01605 352 SMART ring_2 72 113 IPR001841 -
Seca4g01605 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 121 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01605 Seca-Chr4 26118195 26119253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01605 11 341 C3H Transcription Factor Family AT5G05810 46.089 1.06e-79 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01605 K19041 - cave:132189697 335.109