Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01602 ATGAAAGGAGAATATGTAGAGCAACATCCCAAGAGTGAAACTTCTGATATGTTCTCAAAGCTTCACCACCAAAACCAATCACAACCTCTACACCACCCATTCCCTCACCACCCTTTCCAACTCTCTGCGGAGGATGATAACCGTAGCGGAAACACCGCTCAGAAGCCCAACTCATCCGGCGACGGTGCAACCATTGAGGTAGTGAGGCGGCCCAGAGGGCGCCCACCTGGGTCCAAAAACAAGCCCAAACCACCAGTCATCATAACCCGTGACCCAGAGCCCGCCATGAGCCCATACATTCTCGAAGTATCAGGCGGAAACGACGTCGTCCAAGCTATAGCACTTTTCAGTCGCCGCAAGAACATGGGCCTATGCATCCTAACGGGTTCTGGAAGCGTCGCTAACGTCACTCTTCGTCAACCTTCAACCACTCCAGGAGCTACCGTTACTTTTCACGGCCGTTTCGACATCCTCTCCTTATCCGCCACCTTCCTTCCTCAACAATCAGCGGTTCCCAACGGCTTCGCCATCTCCCTCGCCGGACCGCAGGGCCAGATCGTCGGAGGATTAGTCGCCGGCGCTTTGATAGCTGCGGGGACTGTGTTCATCATCGCCGCTTCCTTCAACAACCCGTCGTATCACAGGCTTCCGACGGAAGAAGAGCCTCGAAACTCAGTATCCACCGGAGATGGACATTCGCCGCCAGTCTCCGGCGGCGGTGATGATAACGGGCATGGTCAAGCGGCGTCGTGTGGGATGTCCATGTACAGCTGTCACATGCCGTCGGATGTGATCTGGGCTCCAGCGGCTAGACCACCTTACTGA 825 0.5552 MKGEYVEQHPKSETSDMFSKLHHQNQSQPLHHPFPHHPFQLSAEDDNRSGNTAQKPNSSGDGATIEVVRRPRGRPPGSKNKPKPPVIITRDPEPAMSPYILEVSGGNDVVQAIALFSRRKNMGLCILTGSGSVANVTLRQPSTTPGATVTFHGRFDILSLSATFLPQQSAVPNGFAISLAGPQGQIVGGLVAGALIAAGTVFIIAASFNNPSYHRLPTEEEPRNSVSTGDGHSPPVSGGGDDNGHGQAASCGMSMYSCHMPSDVIWAPAARPPY. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01602 274 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 222 - -
Seca4g01602 274 ProSiteProfiles PPC domain profile profile. 93 229 IPR005175 -
Seca4g01602 274 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 210 IPR005175 -
Seca4g01602 274 MobiDBLite consensus disorder prediction 44 61 - -
Seca4g01602 274 MobiDBLite consensus disorder prediction 1 18 - -
Seca4g01602 274 CDD DUF296 98 208 IPR005175 -
Seca4g01602 274 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 267 IPR014476 GO:0003680
Seca4g01602 274 MobiDBLite consensus disorder prediction 213 245 - -
Seca4g01602 274 MobiDBLite consensus disorder prediction 1 92 - -
Seca4g01602 274 Gene3D - 97 228 - -
Seca4g01602 274 FunFam AT-hook motif nuclear-localized protein 97 227 - -
Seca4g01602 274 PIRSF ESCAROLA 5 269 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01602 Seca-Chr4 26010472 26011317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01602 1 274 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 59.589 1.50e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01602 - - gmx:100788098 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01602 4 26010472 26011317 Seca4g01602 4 26010472 26011317 ECH
Seca4g01602 4 26010472 26011317 Seca4g02147 4 36581105 36583308 PCT