Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01587 ATGGCACCCAGTTTTGATTTTGTTTCAAGCCTCCTTTGTGCTGAAGATAGCAGTGTTTTTGACGATGGGGATGTGTACGAGGAAACGGGGCGTTCTAGGTACCATCAGAGGAGTGAGCAGTTTGGTGACCCAGATGGGTTGCCATTGCAGAGTGAAGAGTGTTTGGCGATGATGATGGAAAAGGAATGTCAACACTTGCCTCGTGCTGATTACTTCAATAGGCTACAGAGTGGGGATTTGGACTTTGGGGCCAGAAAGGAAGCCATTGATTGGATTGAAAAGGTTCGAGCGCATTTCGGTTTTGGTCCTCTCTCTGCATATCTATCCATAAATTACTTGGATCGGTTCCTTTCTGCATATGAATTACCAACTCACTCTCAGAAGGGAAGAGCTTGGACAATGCAACTATTGGCTGTGGCATGCTTATCTCTTGCAGCCAAAATAGAGGAAACTGAGGTTCCTCTGTGTCTTGATTTGCAGGTGGGTGAATCCAAGTTTGTATTTGAGGCTAAAACCATACAGAGAATGGAGCTTGTGGTACTGAGCACATTGAGGTGGAGAATGCAAGCAATTACTCCATTCTCCTTCATTGATTATTTCCTTTCCAAGATCAATGATGATCAAAGTTCATTTAGATCTTCAATTTTGCGATCCACCCAACTCATATTAAGCACCTTAAAAGGAATTGACTTCTTGGAATTCAAACCATCAGAGATTGCAGCAGCAGTGGCTACATATGTTGTGGGGGAAACCAAAACAATTGACACTGCCAAAACAATTTCAGTTCTGATTCAACATGTAGAAAAGGTAAAGATGGAGAGATTATTGAAGTGTGTCACAATGATCCAAGAGCTGTCATCAAACAGTGCATCTGTCCCTTGTGTGCCACAAAGCCCAATAGGTGTGTTGGATGCTTTGTGCTTCAGCTACAAAAGTGATGACACAAATGCTGGTTCATTTTCTTCACATAATAGTCCAGAAGCTAAAAGGAGGAAGCTAAACAAAACCTGTGGAGCAGAGCTTTTGTAG 1029 0.4266 MAPSFDFVSSLLCAEDSSVFDDGDVYEETGRSRYHQRSEQFGDPDGLPLQSEECLAMMMEKECQHLPRADYFNRLQSGDLDFGARKEAIDWIEKVRAHFGFGPLSAYLSINYLDRFLSAYELPTHSQKGRAWTMQLLAVACLSLAAKIEETEVPLCLDLQVGESKFVFEAKTIQRMELVVLSTLRWRMQAITPFSFIDYFLSKINDDQSSFRSSILRSTQLILSTLKGIDFLEFKPSEIAAAVATYVVGETKTIDTAKTISVLIQHVEKVKMERLLKCVTMIQELSSNSASVPCVPQSPIGVLDALCFSYKSDDTNAGSFSSHNSPEAKRRKLNKTCGAELL. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01587 342 PANTHER CYCLINS 51 287 IPR039361 -
Seca4g01587 342 SMART Cyclin_C_2 191 309 IPR004367 -
Seca4g01587 342 SUPERFAMILY Cyclin-like 173 285 IPR036915 -
Seca4g01587 342 SUPERFAMILY Cyclin-like 43 188 IPR036915 -
Seca4g01587 342 Gene3D - 55 281 - -
Seca4g01587 342 CDD CYCLIN_AtCycD-like_rpt1 84 186 - -
Seca4g01587 342 FunFam D2/4-type cyclin 68 185 - -
Seca4g01587 342 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Seca4g01587 342 CDD CYCLIN_AtCycD-like_rpt2 191 282 - -
Seca4g01587 342 FunFam D6-type cyclin 186 280 - -
Seca4g01587 342 Pfam Cyclin, N-terminal domain 54 188 IPR006671 -
Seca4g01587 342 Gene3D - 68 189 - -
Seca4g01587 342 Pfam Cyclin, C-terminal domain 191 291 IPR004367 -
Seca4g01587 342 SMART cyclin_7 90 182 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01587 Seca-Chr4 25743635 25746405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01587 37 319 Core Cell Cycle Gene Families AT2G22490 46.230 1.75e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01587 K18810 - gmx:547739 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01587 4 25743635 25746405 Seca4g01587 4 25743635 25746405 ECH