Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01580 ATGGGTTATCTCTCTTGCAATGCTGAATCTGCAATTGCCACCTGCGATCCCCACTATTGGGATCTCAAGAAGCGAAAAACCATCACCAACAAAAAACAAACAAACACTCCTATCAGGGAGTTTCACTACACCGACCTCCTCACCGCCACTAACGGCTTCTCCGCCGAAAGCTTCTTAGGCAAAGGCAGCCACGGCAGAGTTTACAGAGCCATCCTTCATGGCGGCAAACTCGTCGTTGCAGTCAAAACGACAAAACTCTCTTCCAAGCCTAAACACACCACAACCTGCACCGGTTGCGGTAACTGTACCAGTCCCGCAGAAAACGAGATCGAGATTCTTTCCCAAGTTCCAAGCCCTCGCCTCGTTAACATCATCGGCTACTGCACGGACCCAAACGACAACAAATTAATTGTCGTCGAGTACATGCCCAACGGTTCGCTTCACGATCTCTTGCACTCTGCGGTTCGACCTCCCGGTTGGAACCGGAGAGTCCGGTTCGCGCTGCAAGTTGCGAAAGCGGTTCAAGCACTTCACTGTTCCAACCCTCCGGTGATTCACCGTGACATAAAATCCTCCAACGTTTTGATCGACGAGGAGTGGAACGCTAGGCTCGGTGACTTCGGCCTCGCTCTAAGAGGACACGTGGAGGACGTTCGTGTTAAGTGCACACCACCCGCGGGTACGTTAGGGTACCTCGATCCATGCTATCTTGCGCCGGAGGATCTGAGCGCTAAGAGCGATGTCTTCAGTTTCGGGATCTTGTTGTTGGAGATAATCAGCGGCAGGAACGCAATCGATGTTAATTATAGTCCGCCGTCTGTGGTGGATTGGGCGGTGCCGTTGGTTAAACGCGGTGACTTCGCCGGGATTTGTGATCGGAGAATTGGAACGCCGTCGGATCCATCGGTGATGCGGCAGCTTGCGGTGCTGGCGGCGAGTTGTGTTAGATCGACGGCGGAGAAGCGGCCGTCGATGGCGGAAGTTGTGGAGTGTCTGAAACTAGTGAGGAAGAGGATTCGTGCGTCGCCGATGTGGAGAAATTTGAAGCGGCGCGTGGCGCGTGTGGAGAGTGCGGAACCGTTGATGAGGTGGGAAGTGAATGATTGTGAGTGTGATAGGAGTGAGGAAGTTGTGAGGATAGTGAAGGGTGGGAGTGGGAGTGGGAGTGGGAGTGGGATCAGAAGGAACAGGAAAGTATCCAGTGTGACGAGTGTAGAGTATGAGAATAAACCCTCCAATAAAGTAGTGAGGTCCAAGTCTTCTTCTGGTTCTGCAAGGAATGGGATTAAGATGCAGTTGGATTCGAATCCAAAAAAACCGGGTGGGTCTGGGTCTGGGTCGTACCCGCACCAAAGTGAGTATGGGTTTGGGAGAAGGAAAGGGAAAATGGCAGTGAAGAAATCAAAGTCTATGGGGGTATTGCAAGGACCTCGCCTTTTCCATTATGACAGTGAGAATGACAATAATAATGATCCAATTAATTCGGCTATGTCCAAGTTGGTCATTACGGATAAGTTGGAAAAGAAAATGCTTGAAAAACCATTTGTTGACTCCCATCACATTTGGAGAAGAAGTGTGAGTACTAATAAGGGTAATGAAGGTCTCTGA 1608 0.5068 MGYLSCNAESAIATCDPHYWDLKKRKTITNKKQTNTPIREFHYTDLLTATNGFSAESFLGKGSHGRVYRAILHGGKLVVAVKTTKLSSKPKHTTTCTGCGNCTSPAENEIEILSQVPSPRLVNIIGYCTDPNDNKLIVVEYMPNGSLHDLLHSAVRPPGWNRRVRFALQVAKAVQALHCSNPPVIHRDIKSSNVLIDEEWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSVVDWAVPLVKRGDFAGICDRRIGTPSDPSVMRQLAVLAASCVRSTAEKRPSMAEVVECLKLVRKRIRASPMWRNLKRRVARVESAEPLMRWEVNDCECDRSEEVVRIVKGGSGSGSGSGIRRNRKVSSVTSVEYENKPSNKVVRSKSSSGSARNGIKMQLDSNPKKPGGSGSGSYPHQSEYGFGRRKGKMAVKKSKSMGVLQGPRLFHYDSENDNNNDPINSAMSKLVITDKLEKKMLEKPFVDSHHIWRRSVSTNKGNEGL. 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01580 535 PANTHER OS01G0253100 PROTEIN 32 336 - -
Seca4g01580 535 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524
Seca4g01580 535 MobiDBLite consensus disorder prediction 389 431 - -
Seca4g01580 535 Gene3D Transferase(Phosphotransferase) domain 1 142 352 - -
Seca4g01580 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Seca4g01580 535 FunFam Serine/threonine-protein kinase-like protein 142 346 - -
Seca4g01580 535 Pfam Protein kinase domain 55 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01580 535 Gene3D Phosphorylase Kinase; domain 1 16 141 - -
Seca4g01580 535 MobiDBLite consensus disorder prediction 382 470 - -
Seca4g01580 535 ProSiteProfiles Protein kinase domain profile. 53 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01580 535 SUPERFAMILY Protein kinase-like (PK-like) 30 333 IPR011009 -
Seca4g01580 535 SMART serkin_6 53 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01580 Seca-Chr4 25648782 25650389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01580 39 343 Receptor kinase-like Gene Family AT3G59420 41.613 5.93e-68 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Seca4g01580 Pkinase 9.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01580 - - cam:101503747 709.523