Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01572 ATGGATTTTGACGAGCACGGAGACCAAGAGGAAGAAGAGGAGGAGGAAGAGGAAGAGGAAGAGGAAATGGGATTTCTTGGAAACTCAACGGCGAGGTTGAAAATGAGCGGCGCCGTAGGAGCTGAGGGAGGTGCAACCACCATCACCACGACAGGTGGTCGAAAAAGTGGGCCAGCGGGGACAGTCAGGTACAGGGAATGTCAAAAGAACCACGCCGTCGGTATAGGTGGTCACGCTGTCGACGGTTGCTGCGAGTTCTTGGCAGCCGGTGAGGAAGGTACGCTCGAGGCCGTAATTTGCGCTGCCTGTAACTGTCACCGGAATTTTCACCGCAAGGAGATCGACGGTGAAATCACCTCCTACCACCAGCCACGGCCACAGCCCCCGCTGCAGCCACAGTACCACCACCAATTCTCCCCTTACTACCACCGCGCAGCGCCACCGACTGCAGCCGGTTACCTCCACCACCACATGGTAACTCCGCCGCTTTCCCAGCACCGACCTTTAGCTCTTCCACCTGCGGCTTCGGGAGGGGGTTTCAGTAGAGACGAGGAGGATATGTCCAATCCGAGCAGCAGCGGCGGCGGAGGCGGTAGTGGAACGAAGAAAAGGCATAGGACAAAGTTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTTGCGGAGCGGTTAGGGTGGAGAATCCAGAAGCATGATGAAGCTGCGGTGGAGCAATTCTGTACGGAAACTTGTGTGAAGAGACACGTGCTTAAGGTTTGGATGCACAATAACAAGCACACTCTTGGTAAGAAACCCTAA 798 0.5564 MDFDEHGDQEEEEEEEEEEEEEMGFLGNSTARLKMSGAVGAEGGATTITTTGGRKSGPAGTVRYRECQKNHAVGIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEITSYHQPRPQPPLQPQYHHQFSPYYHRAAPPTAAGYLHHHMVTPPLSQHRPLALPPAASGGGFSRDEEDMSNPSSSGGGGGSGTKKRHRTKFTQEQKDKMLAFAERLGWRIQKHDEAAVEQFCTETCVKRHVLKVWMHNNKHTLGKKP. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01572 265 FunFam Zinc-finger homeodomain protein 2 187 263 - -
Seca4g01572 265 SUPERFAMILY Homeodomain-like 187 263 IPR009057 -
Seca4g01572 265 Pfam ZF-HD protein dimerisation region 62 114 IPR006456 -
Seca4g01572 265 Coils Coil 3 23 - -
Seca4g01572 265 MobiDBLite consensus disorder prediction 164 212 - -
Seca4g01572 265 NCBIfam homeobox domain, ZF-HD class 202 258 IPR006455 -
Seca4g01572 265 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 261 - -
Seca4g01572 265 Gene3D - 187 262 - -
Seca4g01572 265 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Seca4g01572 265 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 113 IPR006456 -
Seca4g01572 265 MobiDBLite consensus disorder prediction 1 25 - -
Seca4g01572 265 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01572 Seca-Chr4 25554174 25554971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01572 62 261 ZF-HD Transcription Factor Family AT4G24660 58.252 2.53e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca4g01572 ZF-HD_dimer 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01572 - - gmx:100820567 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01572 4 25554174 25554971 Seca4g01572 4 25554174 25554971 ECH
Seca4g01572 4 25554174 25554971 Seca8g01882 8 39134897 39135694 PCT