Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01564 ATGTTCTCAACCATGAATTCCTCTATGCAATTAACCATTATTACCATTTTGGCATCTTCGTTATTCCTCTGGCATGCTTTTCTGCGAAAGAGGAGGAGTAACAAAGCTGGCATTAGCAAGAGTAAAGAAGCTCCTGTCCCAGCTGGTGCATGGCCAGTTATTGGTCACCTTCACCTTTTAGGTGGTGATAATCAACTTCTCTATCGAACACTCGGAGCAATGGCTGATCAATACGGACCAGCATTTAACATATGGCTTGGTACTCGCCGAGCTTTTGTGGTCAGTAACTGGGAAGTTGCAAAACAATGCTTCACAACCAATGACAAGGCACTTGCCTCACGTCCCAAAACAGTTGCAGCAAAGCATATGGGATACAACTATGCCGTGTTTGGTTTTGCTCCTTATAGCCCCTTTTGGCGTGAAATGAGAAAGATTGCCACCCTTGAACTTCTTTCCAACCGTAGGCTTGAAATGCTTAAACATGTCAGAGTGTCTGAGCTTAACATGGGTATAACGGACCTGTACAACTCTTGGGTCCAAAATGGTTCAAAGCCTGTGATGATGGAACTTAATAGATGGTTAGAGGATTTGACTCTGAATATGGTGGTTAGAATGGTTGCAGGGAAACGTTACTTTGGTGCCTCAGCTACTTGTGATGATGATGAGGCAAGGCGGTGCCAGAAGGCTATTAATCAATTCTTTCATCTAATTGGCATTTTTGTGGTTTCAGATGCGCTTCCTTTTTTGCGTTGGTTCGATTTGCAGGGGCATGAGAGGGCAATGAAAAAGACAGCCAAGGAGTTAGATGCTATACTTGAAGGATGGCTACAAGAGCATCGCAAACAGAGAGTTAATGGTGAAGTTAAAGCAGAGGGTGAGCAGGATTTCATTGATGTAATGTTGTCACTTGAGGAGGAAGGTCACTTATCAAATTTCCTCTATGACTCGGATATAAGCATCAAATCAACATGCCTAGCTCTTATACTTGGTGGCAGTGATACCACAGCAGGGACGCTTACTTGGGCTATTTCTTTACTCCTCAACAATCGCCAAGCATTAAAAAAGGCACAAGAAGAATTGGACATGAATGTTGGCATGGACCGGCAAGTTGAGGAGTCAGATATTAAAAATCTTGTGTATCTTCAAGCTATTATCAAGGAAACCCTCCGACTATACCCAGCTGGACCCCTACTAGGACCAAGGGAAGCTCAAGAAGATTGTAATGTTGCTGGTTACCATGTCCCCGCTGGCACACGCTTGGTGGTTAACTTATGGAAGATTCATAGGGATCCCAAAATTTGGGAAGATCCTTCTGTTTTCAAACCTGAAAGATTTCTCACAAGCCATGAAGTTGATGTTAGAGGCCAAAACTTTGAACTCATTCCATTTGGTTCTGGTAGACGGTCTTGTCCTGGCATGTCATTTGCACTCTTAGTTCTTCACTTGACACTTGCTCGTCTACTTCATGCATTTGAATTTGCAACCCCATCACATGAACCGGTTGACATGACTGAAAGCCCTGGTTTAACTATTCCTAAGGCAACTCCATTAGAGGTTCTACTTACTCCCCGACTTCCAGCCCAATTATATGCCTAG 1596 0.4355 MFSTMNSSMQLTIITILASSLFLWHAFLRKRRSNKAGISKSKEAPVPAGAWPVIGHLHLLGGDNQLLYRTLGAMADQYGPAFNIWLGTRRAFVVSNWEVAKQCFTTNDKALASRPKTVAAKHMGYNYAVFGFAPYSPFWREMRKIATLELLSNRRLEMLKHVRVSELNMGITDLYNSWVQNGSKPVMMELNRWLEDLTLNMVVRMVAGKRYFGASATCDDDEARRCQKAINQFFHLIGIFVVSDALPFLRWFDLQGHERAMKKTAKELDAILEGWLQEHRKQRVNGEVKAEGEQDFIDVMLSLEEEGHLSNFLYDSDISIKSTCLALILGGSDTTAGTLTWAISLLLNNRQALKKAQEELDMNVGMDRQVEESDIKNLVYLQAIIKETLRLYPAGPLLGPREAQEDCNVAGYHVPAGTRLVVNLWKIHRDPKIWEDPSVFKPERFLTSHEVDVRGQNFELIPFGSGRRSCPGMSFALLVLHLTLARLLHAFEFATPSHEPVDMTESPGLTIPKATPLEVLLTPRLPAQLYA. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01564 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 463 472 IPR017972 GO:0005506|GO:0016705
Seca4g01564 531 Gene3D Cytochrome P450 29 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS P450 superfamily signature 470 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS P450 superfamily signature 461 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS P450 superfamily signature 383 394 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 SUPERFAMILY Cytochrome P450 47 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 CDD CYP82 79 524 - -
Seca4g01564 531 PANTHER CYTOCHROME P450 82C3-RELATED 24 530 - -
Seca4g01564 531 Pfam Cytochrome P450 47 513 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS E-class P450 group I signature 99 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS E-class P450 group I signature 197 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS E-class P450 group I signature 382 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS E-class P450 group I signature 423 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS E-class P450 group I signature 470 493 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS E-class P450 group I signature 460 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g01564 531 FunFam Cytochrome P450 82C4 34 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01564 Seca-Chr4 25343529 25345806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01564 44 531 Cytochrome P450 AT4G31940 70.040 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01564 K23136 - gmx:100811993 936.791