Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01563 ATGTACACTACTACTTCACACACAGTAATGCCAGAGCCAGACCTCTCCTTAAACATCAGCCCCCCCTTTGTTGAGACCAAAGAAGTGGGAAGCTACAATGGATTAACATTGACCAACAAAATGCTTCACAATGACATGTGTTCAACCTCTGACTCTGGTAGCAGTAATGGAAGTGATTTAAGCCAAGAAAATGCCTCTTTCCACAACCTTGGTCATGAGCCAAAGTTGAGCTTAGGCTTTGAAAAGGTTGCTGATTTGAATCCCCATCAAGTACAGGGACTCTCAAGAAACTTCAATACTCACATCCATAACTACCAACCTCATTTCAAACGAAATAGTAGTACTAGAGTGATTCATGGTGTGAAAAGAAGCATCAGAGCTCCTAGAATGAGATGGACTACCACCCTCCATGCTCATTTTGTTCATGCTGTTCAGCTTCTTGGTGGTCATGAAAGGGCAACACCAAAATCTGTGTTAGAGTTGATGAATGTGAAGGATCTAACCCTAGCTCATGTCAAGAGTCATTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGAGGAGCAGGTCATGGACACAAAGATATGAGCTTCAGCCAAAAACCAAGGCTTATTGTCAATCTGCATGGAGTCTCAGCTTGTGATGAGAGAACCGATTTGCCACAGCAGATGAAAAAATCTCAGAGGGCATCATGGCAATCATCAATAGAGTCAAATCCAGATAATTATAGACAAAAGCCCCAAAACAGTTTGGTTTATTCTCATCTCAAACGAAACCAAACCATGGTAAGTGGACAGAATTATGGAGGCATGTCGAATTACATGATGGAGAGGATGGATTCTAGTTCTTTGTCACATTCTGAAGTGATGCTTGATTTAGAATTTACCCTTGGAAGGCCCGCTTTGCAAACAGATCACCAAGCGGAATCAACAGAGTTAACTCTTCTCAAATGTTAA 960 0.4167 MYTTTSHTVMPEPDLSLNISPPFVETKEVGSYNGLTLTNKMLHNDMCSTSDSGSSNGSDLSQENASFHNLGHEPKLSLGFEKVADLNPHQVQGLSRNFNTHIHNYQPHFKRNSSTRVIHGVKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGGAGHGHKDMSFSQKPRLIVNLHGVSACDERTDLPQQMKKSQRASWQSSIESNPDNYRQKPQNSLVYSHLKRNQTMVSGQNYGGMSNYMMERMDSSSLSHSEVMLDLEFTLGRPALQTDHQAESTELTLLKC. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01563 319 MobiDBLite consensus disorder prediction 225 247 - -
Seca4g01563 319 NCBIfam myb-like DNA-binding domain, SHAQKYF class 128 181 IPR006447 GO:0003677
Seca4g01563 319 Gene3D - 127 184 - -
Seca4g01563 319 MobiDBLite consensus disorder prediction 224 247 - -
Seca4g01563 319 Pfam Myb-like DNA-binding domain 129 180 IPR001005 -
Seca4g01563 319 SUPERFAMILY Homeodomain-like 125 182 IPR009057 -
Seca4g01563 319 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 10 307 IPR044847 GO:0000976|GO:0006355|GO:0010158
Seca4g01563 319 FunFam Myb family transcription factor 126 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01563 Seca-Chr4 25323677 25328352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01563 69 220 G2-like Transcription Factor Family AT5G42630 61.184 1.32e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca4g01563 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01563 - - gmx:100780143 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01563 4 25323677 25328352 Seca4g01563 4 25323677 25328352 ECH
Seca4g01563 4 25323677 25328352 Seca4g01563 4 25323677 25328352 PCT