Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01551 ATGCAGGCCTCAGGCTGCTTCCTCGTGCTCTCTTTCCTCTTCCTATCATCATCTTTCTCCTTTGCACTTTCCTCTGATGAAGCCTCTTTCATTGCTCGTCGCCAATTGTTACACCTTAGTGAGAAAGATGATTTACCTGACCACTATGCAGATAACTATAAAACAGATCTAAAATTCCCTAATTCTAAGCTCAAGAGTGCTTACATTGCACTCCAGGCATGGAAAAAAGCAATTTATTCTGACCCAACAAACTTCACAGCGAATTGGGTAGGCCCAGATGTTTGTTCTTACAATGGAGTTTTCTGTGCCGAATCTCTGGATGACCCAAAGACCCAAGTTGTGGCTGGGATTGATCTTAACCATGCAGACATTGCAGGTTACCTTCCTCCAGAGTTTGGTTTGTTAACTGATCTTGCTCTTTTGCATATTAACTCAAACAGGTTCTGTGGGGTTCTCCCAAAGAGCTTCACCAAGTTAAAGCTTTTACATGAGCTTGATATCAGTAACAACCGTTTTGTTGGTCCATTTCCAAAGTCTGTTCTTTCAATCCCAGATATCAAATACCTTGACCTCAGGTTCAATGACTTTGAAGGGGCTATACCTTCTGAGCTTTTCAACAAAACACTTGATGCCATCTTTTTGAACAACAACAGATTCACATCCACAATTCCAGAGAACATGGGGTCTTCTCCAGCTTCTGTTGTGGTTTTAGCCAATAACCATCTCAGTGGATGCATTCCTGGAAGTGTTGGTGATATGAAAGGGACATTGAATGAGTTTATTTTGATTAACAACAACCTCACTGGTTGTTTACCCTCAGACATTGGAAAACTTGAACAAGTCTCTGTCTTCGATGTGAGCCAGAACTCATTTGTTGGTGTATTGCCAAGGACCTTCAAGGGGCTAAAAAATGTGGAGGAGATTTCAATTGCAAACAACAAGCTCACAGGTTTTGTGCCACGTGCCATATGTAGCTTGCCCAAATTGGTGAACTTCACATTCTCTTATAACTATTTCAATGGAGAGGAAGAAGGTTGTGTGCCTTCTAAAAAGGACAAGGACATTGTGTTGGATGATAGGCCAAAGCAAAAGGCAGCAAATGTTTGCAATGTTGTCATAAGCAAGCCTGTTGAATGTAGTAAGGCACAATGTGGAAACCCATCTAGCTCCAATTCTCCATCTGAGAAGCCAACACCAAAACCTTCCCCTTCTCCTTCTAAACCTCCAAGTGAGAAGCAAACACCATCCTCACCCTCTAAGCCTTCTCCATCTGAGAACCCAACACCAAAGTCACCCCCTCAACCTACCCCTTCACCCTCCAACCCTCCAACTCAGAAGCAAACACCACCACCAGCACAACCCAAACCTAGCCCTCCTCCTTCCAATCCTTCACCTGAAAAGCCAACAACACCAGAACCAGCACAGCCACCTAACGCAGAATCACCACCAGAGGAGGATGATCCTCACAAGGAAGCACCAAGGCGACGAACAAGGTCTCCACCTCCACCAGTTCAATCCCCACCACCACCAGTGTATTCTCCACCTCCACCGGTTCAATCCCCACCACCACCGGTTCAGTCCCCTCCTCCCCCAGTTCAATCCCCACCACCGCCGGTTCAATCTCCTCCTCCCCCAGTTCAATCCCCACCACCACCGGTTCAATCCCCTCCACCACCAGTCTACTCTCCACCACCTCCGGTTCACTCACCTCCTCCACCAGTTTACTCTCCACCACCACCGGTCCAATCTCCACCACCACCACCACCCCCTGTCTATTCTCCTCCTCCACCAGTCCACTCTCCACCACCACCAGTTAGCTCCCCTCCACCACCAGTCTACTCTCCTCCACCACCAGTTCAGTCCCCACCACCACCACCGCCAGTTAACTCTCCTCCACCACCAGTCCACTCACCACCACCACCACAAGTGCAGTCTCCACCACCACCTGCACAATCTGTTTCACCACCTCCTTCCCATGATGACGATATCGTTCTGCCCCCTCATTTTGGCTCTTCATATGCTTCCCCACCTCCACCAGTCATTGCCGGCTACTAA 2055 0.4788 MQASGCFLVLSFLFLSSSFSFALSSDEASFIARRQLLHLSEKDDLPDHYADNYKTDLKFPNSKLKSAYIALQAWKKAIYSDPTNFTANWVGPDVCSYNGVFCAESLDDPKTQVVAGIDLNHADIAGYLPPEFGLLTDLALLHINSNRFCGVLPKSFTKLKLLHELDISNNRFVGPFPKSVLSIPDIKYLDLRFNDFEGAIPSELFNKTLDAIFLNNNRFTSTIPENMGSSPASVVVLANNHLSGCIPGSVGDMKGTLNEFILINNNLTGCLPSDIGKLEQVSVFDVSQNSFVGVLPRTFKGLKNVEEISIANNKLTGFVPRAICSLPKLVNFTFSYNYFNGEEEGCVPSKKDKDIVLDDRPKQKAANVCNVVISKPVECSKAQCGNPSSSNSPSEKPTPKPSPSPSKPPSEKQTPSSPSKPSPSENPTPKSPPQPTPSPSNPPTQKQTPPPAQPKPSPPPSNPSPEKPTTPEPAQPPNAESPPEEDDPHKEAPRRRTRSPPPPVQSPPPPVYSPPPPVQSPPPPVQSPPPPVQSPPPPVQSPPPPVQSPPPPVQSPPPPVYSPPPPVHSPPPPVYSPPPPVQSPPPPPPPVYSPPPPVHSPPPPVSSPPPPVYSPPPPVQSPPPPPPVNSPPPPVHSPPPPQVQSPPPPAQSVSPPPSHDDDIVLPPHFGSSYASPPPPVIAGY. 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01551 684 MobiDBLite consensus disorder prediction 394 481 - -
Seca4g01551 684 SUPERFAMILY L domain-like 68 357 - -
Seca4g01551 684 PRINTS Proline rich extensin signature 406 418 - -
Seca4g01551 684 PRINTS Proline rich extensin signature 443 459 - -
Seca4g01551 684 PRINTS Proline rich extensin signature 385 401 - -
Seca4g01551 684 PRINTS Proline rich extensin signature 421 442 - -
Seca4g01551 684 MobiDBLite consensus disorder prediction 482 497 - -
Seca4g01551 684 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 528 - -
Seca4g01551 684 MobiDBLite consensus disorder prediction 381 684 - -
Seca4g01551 684 FunFam Leucine-rich repeat extensin-like protein 1 68 229 - -
Seca4g01551 684 Pfam Leucine rich repeat 281 337 IPR001611 GO:0005515
Seca4g01551 684 Pfam Leucine rich repeat 138 196 IPR001611 GO:0005515
Seca4g01551 684 Pfam Leucine rich repeat N-terminal domain 68 102 IPR013210 -
Seca4g01551 684 Gene3D Ribonuclease Inhibitor 66 233 IPR032675 -
Seca4g01551 684 Gene3D Ribonuclease Inhibitor 234 354 IPR032675 -
Seca4g01551 684 MobiDBLite consensus disorder prediction 498 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01551 Seca-Chr4 25104419 25106494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01551 5 589 Trihelix Transcription Factor Family AT3G19020 51.410 2.01e-178 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01551 - - gmx:100780677 586.645