LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g01550	ATGGCTATCCGTGTTACCTTCTCCTTTTCCGGCTACGTCGCCCAGAATCTCGTCTCCTCCGCCGGAGTTCGTGTCGCCAATTCTCGTTGCGTCCAAGAATGTTGGATCCTCTCTCGCTTCTTCGGAAGTAACCAGAAACCAGACATCAACTCCGCCGGCGGGGTACGCAATTTCTATTCCGATCTCAGAAGGCCTAAATCCAATTCTTGGGCTGGAAACTCTGCTTGTGCCTCTGCCTATTCTACCCTCGCCGGAGAAATTCTCGGCGACAGCTGTAAGAACCCAATTATCTTAGGTTTGATCTCGATGATGAAGTCAACGGCTGGTGTTTCTGGGTCATCCACGGCGGCTATGGGTATAATGGGTATTTCGCCTCTTAAGACCTCTTCGATCATACCCTTCTTTCAGGGTTCGAAGTGGCTTCCTTGCAATGAGTCCCTTCCTGACCCCACAACATGGGAAGTGGATAAAGGTGGAACGCGCAGTGTTGTGAACGCGCAATCGGGTTTAAACGCAAGGGATTATGAGAGGCCTAGTTGGCTTTCGCGGTTACTGAATATATGTTCAGAGGACGCCAAGGCTGTGTTCACTGCTTTAACTGTTAGTGTCCTCTTCAAGTCTTTCTTGGCTGAACCTAAATCTATTCCCTCTGCTTCTATGTACCCAACTCTAGAAGTAGGTGACCGTGTTCTAACAGAGAAGGTTTCTTACTTCTTCAGAAGGCCTGATGTTTCAGACATAGTAATATTTAAAGCGCCATCCAGAGCACAGGAATATGGTTATAGTTCATCTGATATATTTATAAAAAGAGTTGTGGCTAAAGCTGGTGACCTTGTTGAAGTTCGTGGAGGGAAACTATTGGTGAATGGTGAGGCTGAAGAAGAGGAATTCGTTTTAGAGCCTCTTAATTATGAGATAGCTCCAATGGTTGTTCCAAAGGGACATGTTTATGTGCTGGGAGACAATCGTAACAAGAGTTTTGATTCTAGTTACTGGTAA	999	0.4625	MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECWILSRFFGSNQKPDINSAGGVRNFYSDLRRPKSNSWAGNSACASAYSTLAGEILGDSCKNPIILGLISMMKSTAGVSGSSTAAMGIMGISPLKTSSIIPFFQGSKWLPCNESLPDPTTWEVDKGGTRSVVNAQSGLNARDYERPSWLSRLLNICSEDAKAVFTALTVSVLFKSFLAEPKSIPSASMYPTLEVGDRVLTEKVSYFFRRPDVSDIVIFKAPSRAQEYGYSSSDIFIKRVVAKAGDLVEVRGGKLLVNGEAEEEEFVLEPLNYEIAPMVVPKGHVYVLGDNRNKSFDSSYW.	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g01550	332	Gene3D	Umud Fragment, subunit A	217	332	-	-
	Seca4g01550	332	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	267	279	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Seca4g01550	332	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	311	330	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Seca4g01550	332	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	208	224	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Seca4g01550	332	SUPERFAMILY	LexA/Signal peptidase	207	332	IPR036286	-
	Seca4g01550	332	FunFam	Peptidase/ serine-type peptidase	217	332	-	-
	Seca4g01550	332	ProSitePatterns	Signal peptidases I serine active site.	217	224	IPR019756	GO:0004252\|GO:0016020
	Seca4g01550	332	ProSitePatterns	Signal peptidases I signature 3.	316	329	IPR019758	GO:0004252\|GO:0016020
	Seca4g01550	332	Pfam	Signal peptidase, peptidase S26	192	332	IPR019533	GO:0004252\|GO:0006465
	Seca4g01550	332	CDD	S26_SPase_I	211	332	IPR019533	GO:0004252\|GO:0006465
	Seca4g01550	332	PANTHER	SIGNAL PEPTIDASE I	146	332	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Seca4g01550	332	NCBIfam	signal peptidase I	194	332	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g01550	Seca-Chr4	25028419	25030546	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g01550	220	329	MADS-box Gene Family	AT1G29960	29.730	3.01e-07	47.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g01550	K03100		-	gmx:100817525	460.685

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g01550	4	25028419	25030546	Seca4g01550	4	25028419	25030546	ECH