Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01546 ATGAATCTTTCTAACAAACTGTCCTCTCCTTCGCCTAACTCAGGCAAAGGACAATCGCTTCAGCAGCGAAGGCTTACGAGACAGAGGAGGCTGCGACACCTAAACGACCAAGACGCTGCTTTCCATTCAAACGACGTGTCGTCTTCTTCTACTTCTTTACCGGCTTCTCCTTTGCGCTCTTTCTTCATCTCTGCTTCCGACCACTGGTCTTCCTCTGCTGTTCCTCAACCGCTTCCGCTTCCTGAATCCCCGTTGACCCGACGACCCGACACTCCTCATCTCGGATCCCCTCCTTTCGATCACCCTGCTTCTCCTTTTTCCAGAAGGACTGTTGAGCATGATTCGGTGAGAAATTTAAGGTCTGCAAGCAATTTGAGTAGACCGTCTTTTGATCCAGTAACTGCAAATGCAAAATATGATTTGAGAGTGAATATTCCTCCTGCAAGTGCAAGAGTCTTGGCTGGCAATATTTCATATAAAGATCCCAGAGAACTCTCTCATGATAATGACTCTGAAAGTATTTCCAACTTGAAATTGCATTTTGCAGCTAAGAGTGCACCAACAAGCATATTCTCTAGTCCTGTTACTAGTCCACGTAGATCAAGCAATGTAGATTTGTTTGACCCTTTCATCAATTTTCCTCAAGATTTTAATGATGTTTTGAGAGTGTTACCGGGTAAAACTGTTCATAGTCCAGATCAGTCTCCTCTTCGGAGTCCAGGGAGCCACAACCCTAACCTCAACCATGATATTCAAGGGGGATCTCAGCACCATAAAATTTCCTCTAGGGTGTGGCCTGAAAATAACCATGTTGGTGCACATCCATTGCCCCTTCCTCCATTTGCTTCACCCCCAGCACAATCTTGTACAACACCCTCAGCACAATCAAGTACACAACATCAATTAAACATCATGCATCTCACAACAGAAAATTCACCTTCAATGAAAGGTCAATGGCAGAAAGGAAAACTTATTGGACGTGGATCATTCGGAAGTGTTTATCATGCAACCAACCTAGAGACTGGAGCCTCATGTGCAATGAAAGAGGTGGATCTGTTTCTTGATGATCCTAAATCTGCTGACTGCAAAAAGCAGCTAGAGCAGGAAATCAGAATTCTCCGTCAACTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAGTTGGTGAACAATTGTACATATATATGGAGTATGTTCATCCTGGATCACTTCACAAGTTTATGCATGAACATTGTGGGGCTATGACAGAATCTGTGGTTCGCAATTTTACACGGCATATTCTCTCTGGATTGGCATACTTACATAGTACCAAGACTATCCACAGGGATATAAAAGGTGCAAACTTATTGGTTGATGCATCAGGCATTGTCAAGCTTGCAGATTTTGGGGTGTCAAAAATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGCAGTCCCTACTGGATGGCTCCCGAGCTCATGATGGCTGCCATAAAGAAAGAATCCAATCCTGACATTGCCATGGCTGTTGACATATGGAGCTTAGGCTGCACCATCATTGAAATGCTGACAGGAAAGCCTCCTTGGAGCGAGTATAATGGGCATCAAGCCATGTTCAAGGTACTGCACAAATCCCCAGATATACCTGAGAATTTATCTTCAGAAGGACAGGATTTTCTGCAACAGTGTTTCAGAAGAAATCCTGCAGATCGGCCAACGGCTGCAAAGCTTCTTACACATGCCTTTGTACAAAATTTGCATGATCAAGATGTTCTAGTTCATTCACAAGGCTGTCCTAGAGGAGACACCGGACCAAGAGATGATTCACGTAGACATAGTCCCGAACACAGTTCAAAAAATAGCCGTAGTGTAGTGCCAGCCTCTATTCGCACACGGTTTCTCAACAAAATTCATAATTTAATCGGTGACACTTCCAAAAAATATGATACTGAGGAATCTAATCATATTGCATCTTCTCGTGATTCTCCTTGCTCAATGACAGAAGTTAACAGTCCTCAATCTCCCTTGGAATCTAGGACCCTCCATTACATGTCTCCTACCAAATCCACCAACATACCCTTCAACTTTATGAGAATCATGAAGCACGCCACCTTGAAGCATGTCATCAGCTGA 2124 0.4355 MNLSNKLSSPSPNSGKGQSLQQRRLTRQRRLRHLNDQDAAFHSNDVSSSSTSLPASPLRSFFISASDHWSSSAVPQPLPLPESPLTRRPDTPHLGSPPFDHPASPFSRRTVEHDSVRNLRSASNLSRPSFDPVTANAKYDLRVNIPPASARVLAGNISYKDPRELSHDNDSESISNLKLHFAAKSAPTSIFSSPVTSPRRSSNVDLFDPFINFPQDFNDVLRVLPGKTVHSPDQSPLRSPGSHNPNLNHDIQGGSQHHKISSRVWPENNHVGAHPLPLPPFASPPAQSCTTPSAQSSTQHQLNIMHLTTENSPSMKGQWQKGKLIGRGSFGSVYHATNLETGASCAMKEVDLFLDDPKSADCKKQLEQEIRILRQLHHPNIVQYYGSEIVGEQLYIYMEYVHPGSLHKFMHEHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDASGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMMAAIKKESNPDIAMAVDIWSLGCTIIEMLTGKPPWSEYNGHQAMFKVLHKSPDIPENLSSEGQDFLQQCFRRNPADRPTAAKLLTHAFVQNLHDQDVLVHSQGCPRGDTGPRDDSRRHSPEHSSKNSRSVVPASIRTRFLNKIHNLIGDTSKKYDTEESNHIASSRDSPCSMTEVNSPQSPLESRTLHYMSPTKSTNIPFNFMRIMKHATLKHVIS. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01546 707 ProSitePatterns Protein kinases ATP-binding region signature. 325 348 IPR017441 GO:0005524
Seca4g01546 707 SMART serkin_6 319 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01546 707 FunFam Mitogen-activated protein kinase kinase kinase 5 316 618 - -
Seca4g01546 707 MobiDBLite consensus disorder prediction 1 53 - -
Seca4g01546 707 MobiDBLite consensus disorder prediction 642 674 - -
Seca4g01546 707 MobiDBLite consensus disorder prediction 654 674 - -
Seca4g01546 707 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 21 604 - -
Seca4g01546 707 Gene3D Transferase(Phosphotransferase) domain 1 316 616 - -
Seca4g01546 707 MobiDBLite consensus disorder prediction 72 127 - -
Seca4g01546 707 MobiDBLite consensus disorder prediction 232 262 - -
Seca4g01546 707 SUPERFAMILY Protein kinase-like (PK-like) 298 625 IPR011009 -
Seca4g01546 707 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g01546 707 MobiDBLite consensus disorder prediction 591 624 - -
Seca4g01546 707 MobiDBLite consensus disorder prediction 226 299 - -
Seca4g01546 707 ProSiteProfiles Protein kinase domain profile. 319 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01546 707 Pfam Protein kinase domain 320 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01546 707 MobiDBLite consensus disorder prediction 598 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01546 Seca-Chr4 24973440 24979668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01546 24 582 MAP Kinase Kinase Kinase AT5G66850 46.013 2.01e-151 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca4g01546 Pkinase 4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01546 - - gmx:100781764 1015.76