Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01541 ATGGAAGCAATGAATAGAAGCTCTTCCTCCACTACGTCTTCTTCGGATTCTTCCTCTTCAGAGTCTAATCCAAGGAATCCTAACAAACTTGATAGAATCAAAGGCCCATGGAGCGCTGAAGAAGACAGGATCCTGACCCGACTCGTAGAGCGACACGGGGCCCGAAATTGGTCCTTGATTAGCCGTTACATAAAGGGAAGATCCGGTAAGTCGTGCAGGCTTCGGTGGTGTAATCAGCTGAGTCCCACCGTGGAGCACCGTCCATTCTCCGCTGAAGAGGATGAGATCATTATAGCTGCTCATGCTCAATACGGTAACCGGTGGGCCACCATTGCCCGATTACTACCGGGTCGAACCGATAATGCTGTAAAGAACCACTGGAACTCGACGCTGAAACGAAGGGCGAGTGGGAGTGGGAGTGGGTGTGGTTCTGTAGTTGTAACTGCCAATGAGGGAGCCACAGCTACTTCTTCTGCTGGTGTACATGTTCACCCTTGCATGCCGTTGGAAGATGATCCGTTGACCGCGTTGACTCTGGCTCCGCCGGGGATTGGTAATGGTGGTGCTGTGGCTGAACACCAACTACCTCCTGAGAGTAGTGTTCCGTCAGGGTTTTGGGATGTGATGAGAGATGTTATTGCGAGAGAAGTGAGGGAATATGTGTCTTCTAATTTTTCTCACAACTCGGGTTTTCATTCATGA 702 0.5043 MEAMNRSSSSTTSSSDSSSSESNPRNPNKLDRIKGPWSAEEDRILTRLVERHGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSAEEDEIIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRASGSGSGCGSVVVTANEGATATSSAGVHVHPCMPLEDDPLTALTLAPPGIGNGGAVAEHQLPPESSVPSGFWDVMRDVIAREVREYVSSNFSHNSGFHS. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01541 233 Gene3D - 33 85 - -
Seca4g01541 233 SMART sant 33 82 IPR001005 -
Seca4g01541 233 SMART sant 85 133 IPR001005 -
Seca4g01541 233 Gene3D - 87 144 - -
Seca4g01541 233 FunFam Transcription factor MYB44 88 134 - -
Seca4g01541 233 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Seca4g01541 233 PANTHER MYB PROTEIN-RELATED 34 166 - -
Seca4g01541 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 80 IPR017930 -
Seca4g01541 233 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Seca4g01541 233 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g01541 233 FunFam MYB transcription factor 34 85 - -
Seca4g01541 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 135 IPR017930 -
Seca4g01541 233 CDD SANT 88 131 IPR001005 -
Seca4g01541 233 Pfam Myb-like DNA-binding domain 37 95 - -
Seca4g01541 233 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Seca4g01541 233 CDD SANT 36 78 IPR001005 -
Seca4g01541 233 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01541 Seca-Chr4 24926691 24927392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01541 22 142 MYB Transcription Factor Family AT4G37260 72.727 6.70e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g01541 Myb_DNA-bind_6 8.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01541 - - lang:109327990 295.819